Factsheet for GSMUA_Achr10P17260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11830_001	Banana	cytosol	97.92	82.75
Bra019798.1-P	Field mustard	extracellular	18.69	80.6
CDX98027	Canola	extracellular	17.65	76.12
KRH06773	Soybean	nucleus	88.24	74.13
KRG94752	Soybean	cytosol	87.54	73.55
VIT_14s0068g00660.t01	Wine grape	cytosol	87.2	73.26
AT1G12910.1	Thale cress	cytosol	87.2	72.83
CDY16039	Canola	cytosol	86.85	72.54
PGSC0003DMT400025654	Potato	cytosol	86.85	72.33
Solyc04g082470.1.1	Tomato	nucleus	86.85	72.33
CDY26600	Canola	cytosol	86.51	72.25
AT3G26640.1	Thale cress	cytosol	83.39	69.65
VIT_03s0017g02150.t01	Wine grape	cytosol	23.18	69.07
Bra026947.1-P	Field mustard	cytosol	86.85	65.71
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	83.05	58.39
TraesCS6A01G193300.1	Wheat	cytosol	83.74	58.31
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	82.7	57.87
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	83.05	57.69
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	83.05	57.69
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	82.7	57.45
GSMUA_Achr4P29160_001	Banana	cytosol	60.21	54.89
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	74.39	50.95
CDY39498	Canola	cytosol	20.76	50.85
CDY70647	Canola	cytosol	23.18	50.76
CDY70646	Canola	nucleus	18.34	50.48
CDY65574	Canola	nucleus	18.34	50.48
CDY65575	Canola	cytosol	22.84	50.0
CDY19411	Canola	extracellular, plastid	15.22	48.89
GSMUA_Achr5P10240_001	Banana	nucleus	21.11	25.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G17260_001
EnsemblPlants:GSMUA_Achr10P17260_001	EnsemblPlants:GSMUA_Achr10T17260_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RJ01
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000296717A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

WD repeat-containing protein LWD1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G17260_001]

Coordinates

chr10:+:24561734..24562912

Molecular Weight (calculated)

31980.9 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.142

Length

289 amino acids

Sequence
(BLAST)

001: MNWSVRRDKK YRLAIGSLLE GYGNLMEIVQ LDEATGEIRS DPALSFEHPY PPTKAMFVPD RDCLRPDLLA TSADFLRIWR PRRIGTSSID TTCTVWDIDR
101: EAVDTQLIAH DKEVYDIAWG GVGVFASVSA DGSVRVFDLR DKEHSTIIYE SAEPPGTPLV RLGWNKQDPR YMATIIMDSA KVVVLDIRFP TLPVVELHRH
201: QASVNAIAWA PHSSCHICTA GDDSQALIWD LSSMGSDQQP AASTAAAEGG LDPILAYTAG AEIEQLQWSS SQPDWVAIAF STKLQILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.