Factsheet for Solyc04g082470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025654	Potato	cytosol	98.27	98.27
VIT_14s0068g00660.t01	Wine grape	cytosol	90.2	90.99
KRH06773	Soybean	nucleus	89.91	90.7
KRG94752	Soybean	cytosol	89.63	90.41
AT1G12910.1	Thale cress	cytosol	89.34	89.6
CDY16039	Canola	cytosol	87.9	88.15
CDY26600	Canola	cytosol	87.9	88.15
GSMUA_Achr10P...	Banana	cytosol	72.33	86.85
AT3G26640.1	Thale cress	cytosol	84.73	84.97
Bra026947.1-P	Field mustard	cytosol	88.18	80.1
GSMUA_Achr6P11830_001	Banana	cytosol	77.23	78.36
CDY39498	Canola	cytosol	22.19	65.25
TraesCS6A01G193300.1	Wheat	cytosol	77.52	64.82
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	76.95	64.65
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	76.95	64.18
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	75.79	63.99
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	76.37	63.7
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	76.37	63.7
Solyc03g097340.1.1	Tomato	cytosol	57.93	58.77
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	71.18	58.53
CDY70646	Canola	nucleus	17.58	58.1
CDY65574	Canola	nucleus	17.0	56.19
Solyc03g081210.1.1	Tomato	cytosol	49.86	50.58

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.1.5.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4BVX4	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF9	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc04g082470.1	EnsemblPlants:Solyc04g082470.1.1	UniParc:UPI0002766689
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

No Description!

Coordinates

chr4:+:66109253..66110296

Molecular Weight (calculated)

39282.9 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.454

Length

347 amino acids

Sequence
(BLAST)

001: MGASSDPNQQ DGSDEQQRRS EIYTYEAPWH IYAMNWSVRK DKKYRLAIAS LLEQYQNRVE IVQLDDSNGE IRSDPKLSFE HPYPPTKVIF IPDKECQKPD
101: LIATSSDYLR IWRVSNDNSR VDMKSLLNNN RNSEFSGPLT SFDWNEAEPR RIGTSSIDTT CTIWDIERET VDTQLIAHDK EVYDIAWGGV GVFASVSADG
201: SVRVFDLRDK EHSTIIYESS EPDTPLVRLG WNKQDPRYMA TIIMDSAKVV VLDIRFPTLP VVELQRHQAS VNAIAWAPHS SCHICTAGDD SQALIWDLSS
301: MGQPIEGGLD PILAYTAGAE IEQLQWSSSQ PDWVAIAFSN KLQILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.