CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94752	Soybean	cytosol	99.13	99.13
VIT_14s0068g00660.t01	Wine grape	cytosol	95.06	95.06
AT1G12910.1	Thale cress	cytosol	93.02	92.49
CDY16039	Canola	cytosol	91.57	91.04
CDY26600	Canola	cytosol	91.57	91.04
PGSC0003DMT400025654	Potato	cytosol	90.99	90.2
Solyc04g082470.1.1	Tomato	nucleus	90.7	89.91
GSMUA_Achr10P...	Banana	cytosol	74.13	88.24
AT3G26640.1	Thale cress	cytosol	86.63	86.13
Bra026947.1-P	Field mustard	cytosol	91.86	82.72
GSMUA_Achr6P11830_001	Banana	cytosol	79.36	79.82
CDY39498	Canola	cytosol	22.67	66.1
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	78.49	65.69
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	79.07	65.38
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	79.07	65.38
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	78.78	65.14
TraesCS6A01G193300.1	Wheat	cytosol	78.2	64.82
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	77.62	64.65
KRH64293	Soybean	cytosol	58.72	60.3
KRH53635	Soybean	cytosol	58.72	60.12
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	71.8	58.53
CDY70646	Canola	nucleus	17.73	58.1
CDY65574	Canola	nucleus	17.44	57.14

Protein Annotations

EntrezGene:100818850	Gene3D:2.130.10.10	MapMan:27.1.5.1	EMBL:ACUP02009871	EnsemblPlantsGene:GLYMA_16G044800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:I1ML65	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH06773	ProteinID:KRH06773
ProteinID:KRH06773.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF9	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233EEE5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:4251406..4253186

Molecular Weight (calculated)

38618.1 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.358

Length

344 amino acids

Sequence
(BLAST)

001: MGASSDPTQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAIASL LEQYPNRVEI VQLDDSNGEI RSDPSLSFEH PYPPTKAIFI PDKDCHRPDL
101: LATSSDFLRV WHISESAVEL KSLLNGNKNS EYCGPLTSFD WNEAEPRRIG TSSIDTTCTI WDIEKETVDT QLIAHDKEVY DIAWGGVGVF ASVSADGSVR
201: VFDLRDKEHS TIIYESSEPD TPLVRLGWNK QDPRYMATII MDSAKVVVLD IRFPTLPVVE LQRHQASVNA IAWAPHSSCH ICTAGDDSQA LIWDLSSMGQ
301: PVEGGLDPIL AYTAGAEIEQ LQWSSSQPDW VAIAFSTKLQ ILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.