CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65574	Canola	nucleus	96.19	96.19
CDY39498	Canola	cytosol	56.19	50.0
CDY26600	Canola	cytosol	65.71	19.94
CDY16039	Canola	cytosol	64.76	19.65
AT3G26640.1	Thale cress	cytosol	62.86	19.08
AT1G12910.1	Thale cress	cytosol	62.86	19.08
GSMUA_Achr10P...	Banana	cytosol	50.48	18.34
PGSC0003DMT400025654	Potato	cytosol	59.05	17.87
Bra026947.1-P	Field mustard	cytosol	64.76	17.8
VIT_14s0068g00660.t01	Wine grape	cytosol	58.1	17.73
KRH06773	Soybean	nucleus	58.1	17.73
KRG94752	Soybean	cytosol	58.1	17.73
Solyc04g082470.1.1	Tomato	nucleus	58.1	17.58
GSMUA_Achr6P11830_001	Banana	cytosol	52.38	16.08
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	46.67	11.86
TraesCS6A01G193300.1	Wheat	cytosol	46.67	11.81
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	45.71	11.68
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	45.71	11.54
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	45.71	11.54
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	45.71	11.54
CDY05440	Canola	cytosol	10.48	9.17
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	34.29	8.53
CDY70647	Canola	cytosol	6.67	5.3
CDY65575	Canola	cytosol	6.67	5.3
CDX80449	Canola	cytosol	9.52	4.2
CDY19411	Canola	extracellular, plastid	1.9	2.22
CDX98027	Canola	extracellular	0.95	1.49
CDY05439	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY70646	EnsemblPlantsGene:GSBRNA2T00005093001	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	ProteinID:CDY70646	ProteinID:CDY70646.1
SEG:seg	UniParc:UPI0004EEDCCB	UniProt:A0A078JYN2	MapMan:35.1	:	:

Description

BnaCnng69170DBnaCnng69170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYN2]

Coordinates

chrLK042812:+:745..1062

Molecular Weight (calculated)

11789.7 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.779

Length

105 amino acids

Sequence
(BLAST)

001: MNWSVRRDKK YRLAITSLLE QYPNRVEIVH LDESNGEIRS DPNLAFEHPY PHTKTIFIPD KECQRPISSP PPATSSAYGE SPTIAPASSS SRASTATRKA
101: SYVDR

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.