Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 5
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05439 | Canola | cytosol | 28.89 | 25.49 |
| VIT_03s0017g02150.t01 | Wine grape | cytosol | 21.11 | 19.59 |
| CDX98027 | Canola | extracellular | 14.44 | 19.4 |
| CDY70647 | Canola | cytosol | 27.78 | 18.94 |
| CDY65575 | Canola | cytosol | 27.78 | 18.94 |
| GSMUA_Achr10P... | Banana | cytosol | 48.89 | 15.22 |
| CDY05440 | Canola | cytosol | 18.89 | 14.17 |
| CDX80449 | Canola | cytosol | 36.67 | 13.87 |
| CDY26600 | Canola | cytosol | 51.11 | 13.29 |
| CDY16039 | Canola | cytosol | 51.11 | 13.29 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 48.89 | 12.87 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 44.44 | 9.69 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 44.44 | 9.64 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 44.44 | 9.62 |
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 44.44 | 9.62 |
| Zm00001d016653_P001 | Maize | cytoskeleton, cytosol, nucleus | 44.44 | 9.62 |
| Os02t0524600-01 | Rice | cytoskeleton, cytosol, nucleus | 43.33 | 9.49 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 44.44 | 9.48 |
| CDY65574 | Canola | nucleus | 2.22 | 1.9 |
| CDY70646 | Canola | nucleus | 2.22 | 1.9 |
| CDY39498 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY19411 | EnsemblPlantsGene:GSBRNA2T00008960001 | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF9 | ProteinID:CDY19411 | ProteinID:CDY19411.1 |
| SEG:seg | UniParc:UPI0004EDEDFC | UniProt:A0A078G253 | MapMan:35.2 | : | : |
Description
BnaC05g09200DBnaC05g09200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G253]
Coordinates
chrLK032095:+:660001..660273
Molecular Weight (calculated)
9916.3 Da
IEP (calculated)
12.053
GRAVY (calculated)
0.679
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MIKKFSDIAW VGVGVFVSVS ADGSVRVIRS IRRLSTGALS LTLLWCALVG TSRIRGIWLP LSWTVLDIRF PALPVVELQR HQASVNAVAW
001: MVTSSDQIQN GSEEQSKRSE IYTYEAPWQI YAMNWSIRRD KKYRLAITSL IEQYPNRVEI VQLDESNGEI RSDPNLCFEH PYPPTKTSFI PDKECQRPDL
101: LATSSDFLRL WRISDDESRV ELKSCLSSDK NSEFSGPITS FDWNEAEPRR IGTSSIDTTC TIWDIEREVV DTQLIAHDKE VYDIAWGGVG VFASVSEDGS
201: VRVFDLRDKE HSTIIYESGE PSTPLVRLSW NKQDPRYMAT VIMGSAKIVV LDIRFPALPV VELQRHQASV NAIAWAPHSS SHICSAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEV EQLQWSSSQP DWVAIAFSNK LQILRV
101: LATSSDFLRL WRISDDESRV ELKSCLSSDK NSEFSGPITS FDWNEAEPRR IGTSSIDTTC TIWDIEREVV DTQLIAHDKE VYDIAWGGVG VFASVSEDGS
201: VRVFDLRDKE HSTIIYESGE PSTPLVRLSW NKQDPRYMAT VIMGSAKIVV LDIRFPALPV VELQRHQASV NAIAWAPHSS SHICSAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEV EQLQWSSSQP DWVAIAFSNK LQILRV
Arabidopsis Description
LWD2LWD2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7P7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.