Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
- plastid 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70647 | Canola | cytosol | 52.58 | 38.64 |
| CDY65575 | Canola | cytosol | 51.55 | 37.88 |
| GSMUA_Achr10P... | Banana | cytosol | 69.07 | 23.18 |
| CDY19411 | Canola | extracellular, plastid | 19.59 | 21.11 |
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 71.13 | 20.06 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 70.1 | 19.88 |
| Os02t0524600-01 | Rice | cytoskeleton, cytosol, nucleus | 61.86 | 14.6 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 61.86 | 14.46 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 60.82 | 14.29 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 61.86 | 14.22 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 60.82 | 14.18 |
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 60.82 | 14.18 |
| Zm00001d016653_P001 | Maize | cytoskeleton, cytosol, nucleus | 60.82 | 14.18 |
| VIT_08s0007g02920.t01 | Wine grape | cytosol | 43.3 | 12.54 |
| VIT_16s0098g00870.t01 | Wine grape | nucleus | 42.27 | 12.2 |
Protein Annotations
| ArrayExpress:VIT_03s0017g02150 | EMBL:FN596248 | EnsemblPlants:VIT_03s0017g02150.t01 | EnsemblPlantsGene:VIT_03s0017g02150 | Gene3D:2.130.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_CS | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF9 | ProteinID:CCB58055 |
| ProteinID:CCB58055.1 | ScanProsite:PS00678 | UniParc:UPI00021093C5 | UniProt:F6HTP4 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3:-:18899576..18900719
Molecular Weight (calculated)
10412.6 Da
IEP (calculated)
4.879
GRAVY (calculated)
0.295
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MDSAKVMVLD IRFSTFPTVE LQRYQASVNA IAQAPHSSCH ICTVGGDSQA LIWDLSSMCQ PVEGELDPIL AYTAGGRNRA TVVVLLSARL GCNCLLD
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Arabidopsis Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.