Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, cytoskeleton
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 93.51 | 93.51 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 93.51 | 93.51 |
| Os02t0524600-01 | Rice | cytoskeleton, cytosol, nucleus | 85.1 | 86.13 |
| GSMUA_Achr10P... | Banana | cytosol | 57.45 | 82.7 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 80.53 | 80.72 |
| KRH06773 | Soybean | nucleus | 65.14 | 78.78 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 78.12 | 78.69 |
| KRG94752 | Soybean | cytosol | 64.9 | 78.49 |
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 64.66 | 78.2 |
| AT1G12910.1 | Thale cress | cytosol | 64.9 | 78.03 |
| PGSC0003DMT400025654 | Potato | cytosol | 64.66 | 77.52 |
| CDY16039 | Canola | cytosol | 64.18 | 77.17 |
| Solyc04g082470.1.1 | Tomato | nucleus | 64.18 | 76.95 |
| CDY26600 | Canola | cytosol | 63.94 | 76.88 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 61.54 | 74.85 |
| AT3G26640.1 | Thale cress | cytosol | 61.78 | 74.28 |
| Bra019798.1-P | Field mustard | extracellular | 11.78 | 73.13 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 72.36 | 71.33 |
| Bra026947.1-P | Field mustard | cytosol | 64.42 | 70.16 |
| CDX98027 | Canola | extracellular | 11.3 | 70.15 |
| VIT_03s0017g02150.t01 | Wine grape | cytosol | 14.18 | 60.82 |
| CDY39498 | Canola | cytosol | 15.62 | 55.08 |
| Zm00001d017616_P001 | Maize | extracellular | 46.15 | 54.39 |
| CDY70646 | Canola | nucleus | 11.54 | 45.71 |
| CDY65574 | Canola | nucleus | 11.54 | 45.71 |
| CDY70647 | Canola | cytosol | 14.42 | 45.45 |
| CDY65575 | Canola | cytosol | 14.18 | 44.7 |
| CDY19411 | Canola | extracellular, plastid | 9.62 | 44.44 |
Protein Annotations
| EntrezGene:100383192 | Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:AAR01949.1 | ProteinID:AQK71370.1 | EMBL:BT066523 |
| EMBL:EU967660 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 |
| PANTHER:PTHR19919:SF9 | UniProt:Q6VGS4 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000023346C | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d016653 | EnsemblPlants:Zm00001d016653_P001 |
| EnsemblPlants:Zm00001d016653_T001 | SEG:seg | : | : | : | : |
Description
myb3WD repeat-containing protein LWD1
Coordinates
chr5:-:171349333..171350583
Molecular Weight (calculated)
44354.3 Da
IEP (calculated)
4.562
GRAVY (calculated)
-0.375
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVGEGDAW ADQEQGNGGG SRGVGGGGGE AKRSEIYTYE AAWHIYAMNW SVRRDKKYRL AIASLLEQVT NRVEVVQLDE ASGDIAPVLT FDHQYPPTKT
101: MFMPDPHALR PDLLATSADH LRIWRIPSSD DAEDGAASAN NNNGSVRCNG TQQPGIELRS ELNGNRNSDY CGPLTSFDWN DADPRRIGTS SIDTTCTIWD
201: VEREAVDTQL IAHDKEVYDI AWGGAGVFAS VSADGSVRVF DLRDKEHSTI IYESGSGGSS GGGSNSGAGD GGTASPTPLV RLGWNKQDPR YMATIIMDSP
301: KVVVLDIRYP TLPVVELHRH HAPVNAIAWA PHSSCHICTA GDDMQALIWD LSSMGTGSNG SGNGNGNTAA GAAAEGGLDP ILAYTAGAEI EQLQWSATQP
401: DWVAIAFANK LQILRV
101: MFMPDPHALR PDLLATSADH LRIWRIPSSD DAEDGAASAN NNNGSVRCNG TQQPGIELRS ELNGNRNSDY CGPLTSFDWN DADPRRIGTS SIDTTCTIWD
201: VEREAVDTQL IAHDKEVYDI AWGGAGVFAS VSADGSVRVF DLRDKEHSTI IYESGSGGSS GGGSNSGAGD GGTASPTPLV RLGWNKQDPR YMATIIMDSP
301: KVVVLDIRYP TLPVVELHRH HAPVNAIAWA PHSSCHICTA GDDMQALIWD LSSMGTGSNG SGNGNGNTAA GAAAEGGLDP ILAYTAGAEI EQLQWSATQP
401: DWVAIAFANK LQILRV
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Arabidopsis Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.