CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16039	Canola	cytosol	99.42	99.42
AT1G12910.1	Thale cress	cytosol	97.98	97.98
VIT_14s0068g00660.t01	Wine grape	cytosol	91.33	91.86
KRH06773	Soybean	nucleus	91.04	91.57
KRG94752	Soybean	cytosol	90.75	91.28
AT3G26640.1	Thale cress	cytosol	90.75	90.75
Bra026947.1-P	Field mustard	cytosol	99.71	90.31
PGSC0003DMT400025654	Potato	cytosol	89.02	88.76
Solyc04g082470.1.1	Tomato	nucleus	88.15	87.9
GSMUA_Achr10P...	Banana	cytosol	72.25	86.51
CDY39498	Canola	cytosol	27.75	81.36
GSMUA_Achr6P11830_001	Banana	cytosol	77.17	78.07
CDX98027	Canola	extracellular	14.74	76.12
CDY70646	Canola	nucleus	19.94	65.71
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	76.59	64.48
CDX80449	Canola	cytosol	44.22	64.29
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	77.17	64.18
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	77.17	64.18
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	76.88	63.94
CDY65574	Canola	nucleus	19.36	63.81
TraesCS6A01G193300.1	Wheat	cytosol	76.3	63.61
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	75.43	63.2
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	70.52	57.82
CDY05440	Canola	cytosol	18.5	53.33
CDY70647	Canola	cytosol	20.23	53.03
CDY65575	Canola	cytosol	19.94	52.27
CDY19411	Canola	extracellular, plastid	13.29	51.11
CDY05439	Canola	cytosol	13.87	47.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.1.5.1	UniProt:A0A078GJC3	EnsemblPlants:CDY26600	ProteinID:CDY26600	ProteinID:CDY26600.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00035471001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF9	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE4504	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaA09g46770DBnaA09g46770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJC3]

Coordinates

chrLK032192:-:289692..290930

Molecular Weight (calculated)

39032.6 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.398

Length

346 amino acids

Sequence
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWQI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLAFEH PYPHTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIDREAV DTQLIAHDKE VLDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS SHICTAGDDS QALIWDISSM
301: GQQVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.