Factsheet for VIT_14s0068g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06773	Soybean	nucleus	95.06	95.06
KRG94752	Soybean	cytosol	94.77	94.77
AT1G12910.1	Thale cress	cytosol	93.6	93.06
CDY16039	Canola	cytosol	91.86	91.33
CDY26600	Canola	cytosol	91.86	91.33
PGSC0003DMT400025654	Potato	cytosol	91.28	90.49
Solyc04g082470.1.1	Tomato	nucleus	90.99	90.2
GSMUA_Achr10P...	Banana	cytosol	73.26	87.2
AT3G26640.1	Thale cress	cytosol	86.34	85.84
Bra026947.1-P	Field mustard	cytosol	92.15	82.98
GSMUA_Achr6P11830_001	Banana	cytosol	78.49	78.95
VIT_03s0017g02150.t01	Wine grape	cytosol	20.06	71.13
CDY39498	Canola	cytosol	22.97	66.95
TraesCS6A01G193300.1	Wheat	cytosol	79.07	65.54
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	78.2	65.45
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	79.07	65.38
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	79.07	65.38
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	78.49	65.38
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	78.2	64.66
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	73.26	59.72
VIT_16s0098g00870.t01	Wine grape	nucleus	57.85	59.23
VIT_08s0007g02920.t01	Wine grape	cytosol	56.69	58.21
CDY70646	Canola	nucleus	17.73	58.1
CDY65574	Canola	nucleus	17.44	57.14

Protein Annotations

EntrezGene:100241251	wikigene:100241251	Gene3D:2.130.10.10	MapMan:27.1.5.1	ProteinID:ABF66626	ProteinID:ABF66626.2
ProteinID:CCB46951	ProteinID:CCB46951.1	EMBL:DQ517914	EMBL:FN595232	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_001268006.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	UniProt:Q19N38	SMART:SM00320	SUPFAM:SSF50978
TIGR:TC53712	UniParc:UPI0000DDA6B9	ArrayExpress:VIT_14s0068g00660	EnsemblPlantsGene:VIT_14s0068g00660	EnsemblPlants:VIT_14s0068g00660.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EntrezGene:WDR2	wikigene:WDR2
RefSeq:XP_010660590.1	RefSeq:XP_010660591.1	RefSeq:XP_010660592.1	:	:	:

Description

WD repeat 2 [Source:UniProtKB/TrEMBL;Acc:Q19N38]

Coordinates

chr14:+:24473597..24477950

Molecular Weight (calculated)

38767.4 Da

IEP (calculated)

4.465

GRAVY (calculated)

-0.358

Length

344 amino acids

Sequence
(BLAST)

001: MGASSDPTQD ASDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAIASL LEQYPNRVEI VQLDDSTGEI RSDPNLSFEH HYPPTKTIFI PDKDCQKPDL
101: LATSSDFLRV WNISDDRVEL KCLLNGNRNS EFCGPLTSFD WNEAEPKRIG TSSIDTTCTI WDIERETVDT QLIAHDKEVF DIAWGGVGVF ASVSADGSVR
201: VFDLRDKEHS TIIYESSEPD TPLVRLGWNK QDPRYMATII MDSAKVVVLD IRFPTLPVVE LQRHQASVNA IAWAPHSSCH ICTAGDDSQA LIWDLSSMGQ
301: PVEGGLDPIL AYTAGAEIEQ LQWSSSQPDW VAIAFSTKLQ ILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.