Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 58.21 | 56.69 |
| VIT_16s0098g00870.t01 | Wine grape | nucleus | 54.63 | 54.46 |
| VIT_03s0017g02150.t01 | Wine grape | cytosol | 12.54 | 43.3 |
Protein Annotations
| EntrezGene:100254525 | wikigene:100254525 | Gene3D:2.130.10.10 | MapMan:35.1 | EMBL:AM423597 | ProteinID:CAN66600 |
| ProteinID:CAN66600.1 | ProteinID:CCB55455 | ProteinID:CCB55455.1 | UniProt:F6HKN3 | EMBL:FN595991 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EntrezGene:LOC100254525 | wikigene:LOC100254525 | PFAM:PF00400 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF4 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00015C9DB6 | ArrayExpress:VIT_08s0007g02920 | EnsemblPlantsGene:VIT_08s0007g02920 | EnsemblPlants:VIT_08s0007g02920.t01 | unigene:Vvi.20537 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002281909 |
| RefSeq:XP_002281909.1 | RefSeq:XP_010654117.1 | RefSeq:XP_010654118.1 | : | : | : |
Description
No Description!
Coordinates
chr8:+:16997230..16999810
Molecular Weight (calculated)
37933.8 Da
IEP (calculated)
4.759
GRAVY (calculated)
-0.221
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSPVEKKPG VYTYMAQWPI YSLAWSVRRD KKSRLAVGSF LEDYSNKVEV VQFSQETLDF STDSRLVFDH PYAPTKLMFF PSEEAMNPDL IATSGDYLRL
101: WEIHDDRIEL KALLNGNKSE FNSAITSFDW AQLDARRIAT CSVDTTCTIW DVERAAVDTQ LVAHDKEVFD ISWGGVGIFA SVSGDGSARI FDLRDKERST
201: IIYENPIPDS PLLRLEWNKG DPKLIATVGM DSNKVVILDI RFPTTPILEL RKHETSVNAI SWAPHVGRHL CSVGDDSRAL IWDVASHGFR LDATDEVEPI
301: MWYGSTAEIN QARWSPVDLD WIAIAFSNKL QLLKV
101: WEIHDDRIEL KALLNGNKSE FNSAITSFDW AQLDARRIAT CSVDTTCTIW DVERAAVDTQ LVAHDKEVFD ISWGGVGIFA SVSGDGSARI FDLRDKERST
201: IIYENPIPDS PLLRLEWNKG DPKLIATVGM DSNKVVILDI RFPTTPILEL RKHETSVNAI SWAPHVGRHL CSVGDDSRAL IWDVASHGFR LDATDEVEPI
301: MWYGSTAEIN QARWSPVDLD WIAIAFSNKL QLLKV
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Arabidopsis Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.