Factsheet for VIT_16s0098g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT5G24520.1	VIT_07s0104g00090.t01	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80449	Canola	cytosol	58.93	83.19
Solyc03g097340.1.1	Tomato	cytosol	82.44	80.99
PGSC0003DMT400001513	Potato	nucleus	81.55	80.12
PGSC0003DMT400068077	Potato	cytosol	81.55	80.12
KRH64293	Soybean	cytosol	78.27	78.51
KRH53635	Soybean	cytosol	78.27	78.27
Bra009770.1-P	Field mustard	cytosol	77.08	76.85
AT5G24520.1	Thale cress	cytosol	76.49	75.37
PGSC0003DMT400094468	Potato	cytosol	72.32	70.85
GSMUA_Achr4P29160_001	Banana	cytosol	65.48	69.4
Bra029411.1-P	Field mustard	cytosol	24.7	69.17
CDY05440	Canola	cytosol	24.4	68.33
Solyc03g081210.1.1	Tomato	cytosol	68.45	67.25
Os02t0682500-01	Rice	cytosol	64.58	61.13
Zm00001d017616_P001	Maize	extracellular	63.39	60.34
TraesCS6A01G259400.1	Wheat	cytosol	63.1	59.55
TraesCS6B01G286700.1	Wheat	cytosol	62.8	59.27
EES05725	Sorghum	cytosol	55.36	58.49
VIT_14s0068g00660.t01	Wine grape	cytosol	59.23	57.85
HORVU0Hr1G016450.1	Barley	cytosol	63.1	56.23
VIT_08s0007g02920.t01	Wine grape	cytosol	54.46	54.63
VIT_03s0017g02150.t01	Wine grape	cytosol	12.2	42.27
GSMUA_Achr5P10240_001	Banana	nucleus	25.3	34.84

Protein Annotations

EntrezGene:100248734	wikigene:100248734	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:ABF66625	ProteinID:ABF66625.2
EMBL:AM442623	ProteinID:CAN67365	ProteinID:CAN67365.1	ProteinID:CCB48097	ProteinID:CCB48097.1	EMBL:DQ517913
EMBL:FN595247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150
GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009957	GO:GO:0009987	GO:GO:0010026
GO:GO:0030154	GO:GO:0032880	GO:GO:0045165	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
RefSeq:NP_001268101.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	UniProt:Q19N39	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC63884	UniParc:UPI0000DDA6B8
ArrayExpress:VIT_16s0098g00870	EnsemblPlantsGene:VIT_16s0098g00870	EnsemblPlants:VIT_16s0098g00870.t01	unigene:Vvi.13992	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EntrezGene:WDR1	wikigene:WDR1	RefSeq:XP_010662853.1

Description

WD-repeat 1 [Source:UniProtKB/TrEMBL;Acc:Q19N39]

Coordinates

chr16:+:21201347..21203802

Molecular Weight (calculated)

37793.3 Da

IEP (calculated)

4.883

GRAVY (calculated)

-0.320

Length

336 amino acids

Sequence
(BLAST)

001: MERSSQESHL RSENCVTYES PYPLYSMAIS SSTQHHHPRI AIGSFIEELS NRVDIVSFDE DALAIRTHPS LSFDHPYPPT KLMFHPNSRT SPDHLASSGE
101: YLRLWEVRDN SIQPLSVLNN SKTSEFCAPL TSFDWNEVEP RRIGTSSIDT TCTIWDVERG VVETQLIAHD KEVYDIAWGE AGVFASVSAD GSVRIFDLRD
201: KEHSTIIYES PQPDTPLLRL AWNKQDVRYM ATILMDSNKI VILDIRSPTM PVAELERHRA SVNAISWAPQ SSRHICSGGD DSQALIWELP TLAGPNGIDP
301: MSVYLASSEI NQLQWSAAQP EWIAIAFSNK LQLLKV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.