Factsheet for PGSC0003DMT400068077

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028052
PGSC0003DMT400028054
PGSC0003DMT400032140
PGSC0003DMT400033569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT5G24520.1	PGSC0003DMT400028052	AT4G09820.1	15255866
AT5G24520.1	PGSC0003DMT400028054	AT4G09820.1	15255866
AT5G24520.1	PGSC0003DMT400033569	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097340.1.1	Tomato	cytosol	97.66	97.66
PGSC0003DMT400001513	Potato	nucleus	96.78	96.78
PGSC0003DMT400094468	Potato	cytosol	83.04	82.8
VIT_16s0098g00870.t01	Wine grape	nucleus	80.12	81.55
CDX80449	Canola	cytosol	54.97	78.99
KRH64293	Soybean	cytosol	74.56	76.12
KRH53635	Soybean	cytosol	74.56	75.89
Bra009770.1-P	Field mustard	cytosol	74.56	75.67
AT5G24520.1	Thale cress	cytosol	75.15	75.37
Bra029411.1-P	Field mustard	cytosol	25.15	71.67
GSMUA_Achr4P29160_001	Banana	cytosol	65.79	70.98
CDY05440	Canola	cytosol	24.85	70.83
Zm00001d017616_P001	Maize	extracellular	63.16	61.19
Os02t0682500-01	Rice	cytosol	62.57	60.28
TraesCS6A01G259400.1	Wheat	cytosol	62.28	59.83
EES05725	Sorghum	cytosol	55.56	59.75
TraesCS6B01G286700.1	Wheat	cytosol	61.99	59.55
PGSC0003DMT400025654	Potato	cytosol	59.06	58.21
HORVU0Hr1G016450.1	Barley	cytosol	61.99	56.23
GSMUA_Achr5P10240_001	Banana	nucleus	24.56	34.43

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ProteinID:AGC31678	ProteinID:AGC31678.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EMBL:JX848661	UniProt:M1CIE3
PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400026477	PGSC:PGSC0003DMG400026477	EnsemblPlants:PGSC0003DMT400068077	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295EBC4
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

Transparent testa glabra 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400026477]

Coordinates

chr3:-:46372646..46373994

Molecular Weight (calculated)

38285.0 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.252

Length

342 amino acids

Sequence
(BLAST)

001: MENSSQESHL RSENSVTYDS SYPIYAMAFS SFNSSLTNRC RRLAVGSFIE EFNNRVDILS FDEDTLTLKP VPNLSFEHPY PPTKLMFHPN PSASLKTNDI
101: LASSGDYLRL WDVTDTSIEP LFTLSNNKTS EYCAPLTSFD WNEVEPRRIG TSSIDTTCTI WDVEKGVVET QLIAHDKEVY DIAWGEAGVF ASVSADGSVR
201: IFDLRDKEHS TIIYESPKPD TPLLRLAWNK QDLRYMATIL MDSNKIVILD IRSPAMPVAE LDRHQASVNA IAWAPQSCRH ICSAGDDGQA LIWELPTVAG
301: PNGIDPMTVY SAGAEINQIQ WSAAHRDWIA IAFSNKLQLL KV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.