Factsheet for HORVU0Hr1G016450.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G020370.2
HORVU2Hr1G096810.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	HORVU2Hr1G096810.5	AT1G63650.1	12917293
AT5G24520.1	HORVU1Hr1G020370.2	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G286700.1	Wheat	cytosol	93.1	98.6
TraesCS6A01G259400.1	Wheat	cytosol	93.1	98.6
Zm00001d017616_P001	Maize	extracellular	80.37	85.84
Os02t0682500-01	Rice	cytosol	78.78	83.66
EES05725	Sorghum	cytosol	70.56	83.65
CDX80449	Canola	cytosol	45.36	71.85
GSMUA_Achr4P29160_001	Banana	cytosol	57.56	68.45
Bra009770.1-P	Field mustard	cytosol	57.29	64.09
KRH53635	Soybean	cytosol	56.76	63.69
KRH64293	Soybean	cytosol	56.23	63.28
VIT_16s0098g00870.t01	Wine grape	nucleus	56.23	63.1
AT5G24520.1	Thale cress	cytosol	56.76	62.76
PGSC0003DMT400068077	Potato	cytosol	56.23	61.99
Solyc03g097340.1.1	Tomato	cytosol	55.7	61.4
PGSC0003DMT400001513	Potato	nucleus	55.17	60.82
CDY05440	Canola	cytosol	18.83	59.17
Bra029411.1-P	Field mustard	cytosol	18.83	59.17
PGSC0003DMT400094468	Potato	cytosol	49.87	54.81
Solyc03g081210.1.1	Tomato	cytosol	47.48	52.34
CDY05439	Canola	cytosol	12.2	45.1
Bra029410.1-P	Field mustard	cytosol	12.2	45.1
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	44.03	39.34
GSMUA_Achr5P10240_001	Banana	nucleus	21.75	33.61

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287E369	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0008150	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009957
GO:GO:0009987	GO:GO:0010026	GO:GO:0030154	GO:GO:0032880	GO:GO:0045165	EnsemblPlantsGene:HORVU0Hr1G016450
EnsemblPlants:HORVU0Hr1G016450.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B478C58	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:88366914..88373289

Molecular Weight (calculated)

40580.8 Da

IEP (calculated)

4.846

GRAVY (calculated)

-0.124

Length

377 amino acids

Sequence
(BLAST)

001: QHPPAQVPPQ TPTQQGPTPP PMDQPKPPPS AAASPAGADA APNPYAFTCE LPHSIYALAF SPSAPVLAAG SFLEDLHNRV SLLCFDSVHP TAASFRTVPS
101: LSFDHPYPPT KLQFNPRAAS TPLLASSSDA LRLWHAPLDD LSASAPAPEL RSVLDNRKAS ASEFCAPLTS FDWNEIEPRR IGTASIDTTC TVWDIERGVV
201: ETQLIAHDKA VHDIAWGEAG VFASVSADGS VRVFDLRDKE HSTIVYESPR PDTPLLRLAW NRYDLRYMAA LLMDSSAVVV LDIRAPGVPV AELHRHGGCV
301: NAVAWAPQAT RHLCSAGDDG QALIWELPEA PAAVPPEGID PVLVYDAGAE INQLQWVAGH PDWMGISIEN KVQLLRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.