Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009770.1-P | Field mustard | cytosol | 92.38 | 93.47 |
| CDX80449 | Canola | cytosol | 63.34 | 90.76 |
| VIT_16s0098g00870.t01 | Wine grape | nucleus | 75.37 | 76.49 |
| KRH53635 | Soybean | cytosol | 75.37 | 76.49 |
| PGSC0003DMT400001513 | Potato | nucleus | 76.25 | 76.02 |
| Bra029411.1-P | Field mustard | cytosol | 26.69 | 75.83 |
| Solyc03g097340.1.1 | Tomato | cytosol | 75.95 | 75.73 |
| PGSC0003DMT400068077 | Potato | cytosol | 75.37 | 75.15 |
| CDY05440 | Canola | cytosol | 26.39 | 75.0 |
| KRH64293 | Soybean | cytosol | 73.61 | 74.93 |
| GSMUA_Achr4P29160_001 | Banana | cytosol | 61.88 | 66.56 |
| PGSC0003DMT400094468 | Potato | cytosol | 66.57 | 66.18 |
| Solyc03g081210.1.1 | Tomato | cytosol | 63.93 | 63.74 |
| Zm00001d017616_P001 | Maize | extracellular | 63.34 | 61.19 |
| Os02t0682500-01 | Rice | cytosol | 63.05 | 60.56 |
| TraesCS6A01G259400.1 | Wheat | cytosol | 63.05 | 60.39 |
| EES05725 | Sorghum | cytosol | 56.3 | 60.38 |
| TraesCS6B01G286700.1 | Wheat | cytosol | 62.76 | 60.11 |
| AT1G12910.1 | Thale cress | cytosol | 59.53 | 58.67 |
| HORVU0Hr1G016450.1 | Barley | cytosol | 62.76 | 56.76 |
| AT3G26640.1 | Thale cress | cytosol | 57.18 | 56.36 |
| GSMUA_Achr5P10240_001 | Banana | nucleus | 22.29 | 31.15 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:832523 | UniProt:A0A178UQK6 | ProteinID:AED93319.1 | ProteinID:AED93320.1 |
| ProteinID:AED93321.1 | EMBL:AK227211 | ProteinID:ANM69758.1 | ArrayExpress:AT5G24520 | EnsemblPlantsGene:AT5G24520 | RefSeq:AT5G24520 |
| TAIR:AT5G24520 | RefSeq:AT5G24520-TAIR-G | EnsemblPlants:AT5G24520.1 | TAIR:AT5G24520.1 | ProteinID:BAB11204.1 | EMBL:BT020231 |
| EMBL:BT020513 | ProteinID:CAB45372.1 | ProteinID:CAC10523.1 | ProteinID:CAC10524.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009723 |
| GO:GO:0009733 | GO:GO:0009957 | GO:GO:0009987 | GO:GO:0010026 | GO:GO:0030154 | GO:GO:0032880 |
| GO:GO:0045165 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_001318637.1 | RefSeq:NP_197840.1 |
| RefSeq:NP_851069.1 | RefSeq:NP_851070.1 | ProteinID:OAO95955.1 | PFAM:PF00400 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020057 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF2 | UniProt:Q9XGN1 |
| SMART:SM00320 | SUPFAM:SSF50978 | Symbol:TTG1 | UniParc:UPI000002FF91 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
Coordinates
chr5:-:8370317..8372847
Molecular Weight (calculated)
37893.5 Da
IEP (calculated)
4.478
GRAVY (calculated)
-0.260
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.