Factsheet for Zm00001d017616_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000236_P001
Zm00001d019170_P001
Zm00001d026147_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	Zm00001d000236_P001	AT1G63650.1	12917293
AT5G24520.1	Zm00001d026147_P002	AT1G63650.1	12917293
AT5G24520.1	Zm00001d019170_P001	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05725	Sorghum	cytosol	79.32	88.05
Os02t0682500-01	Rice	cytosol	84.7	84.23
TraesCS6B01G286700.1	Wheat	cytosol	84.7	83.99
TraesCS6A01G259400.1	Wheat	cytosol	84.7	83.99
HORVU0Hr1G016450.1	Barley	cytosol	85.84	80.37
CDX80449	Canola	cytosol	47.88	71.01
GSMUA_Achr4P29160_001	Banana	cytosol	60.62	67.51
KRH53635	Soybean	cytosol	60.91	63.99
Bra009770.1-P	Field mustard	cytosol	60.62	63.5
VIT_16s0098g00870.t01	Wine grape	nucleus	60.34	63.39
AT5G24520.1	Thale cress	cytosol	61.19	63.34
PGSC0003DMT400068077	Potato	cytosol	61.19	63.16
KRH64293	Soybean	cytosol	59.77	62.99
Solyc03g097340.1.1	Tomato	cytosol	60.34	62.28
PGSC0003DMT400001513	Potato	nucleus	60.06	61.99
CDY05440	Canola	cytosol	19.55	57.5
Bra029411.1-P	Field mustard	cytosol	19.55	57.5
PGSC0003DMT400094468	Potato	cytosol	54.11	55.69
Solyc03g081210.1.1	Tomato	cytosol	51.56	53.22
CDY05439	Canola	cytosol	13.6	47.06
Bra029410.1-P	Field mustard	cytosol	13.6	47.06
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	54.39	46.15
GSMUA_Achr5P10240_001	Banana	nucleus	21.81	31.56

Protein Annotations

EntrezGene:103627556	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:AAM76742.1	ProteinID:AQK73567.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0009719	GO:GO:0009723
GO:GO:0009733	GO:GO:0009957	GO:GO:0009987	GO:GO:0010026	GO:GO:0030154	GO:GO:0032880
GO:GO:0045165	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EMBL:KJ728394	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	UniProt:Q3V810
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00001D8775	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d017616	EnsemblPlants:Zm00001d017616_P001	EnsemblPlants:Zm00001d017616_T001	SEG:seg

Description

pale aleurone color1Anthocyanin biosynthetic gene regulator PAC1

Coordinates

chr5:-:201801849..201802910

Molecular Weight (calculated)

38266.0 Da

IEP (calculated)

4.857

GRAVY (calculated)

-0.071

Length

353 amino acids

Sequence
(BLAST)

001: MDPPKPPSSV ASSSGPETPN PHAFTCELPH SIYALAFSPV APVLASGSFL EDLHNRVSLL SFDPVRPSAA SFRALPALSF DHPYPPTKLQ FNPRAAAPSL
101: LASSADTLRI WHTPLDDLSD TAPAPELRSV LDNRKASSEF CAPLTSFDWN EVEPRRIGTA SIDTTCTVWD IDRGVVETQL IAHDKAVHDI AWGEAGVFAS
201: VSADGSVRVF DLRDKEHSTI VYESPRPDTP LLRLAWNRSD LRYMAALLMD SSAVVVLDIR APGVPVAELH RHRACANAVA WAPQATRHLC SAGDDGQALI
301: WELPETAAAV PAEGIDPVLV YDAGAEINQL QWAAAHPDWM AIAFENKVQL LRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.