CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029410.1-P	Field mustard	cytosol	100.0	100.0
CDY19411	Canola	extracellular, plastid	25.49	28.89
CDX80449	Canola	cytosol	52.94	22.69
CDY05440	Canola	cytosol	25.49	21.67
CDX98027	Canola	extracellular	13.73	20.9
GSMUA_Achr4P29160_001	Banana	cytosol	46.08	14.83
EES05725	Sorghum	cytosol	45.1	14.47
CDY16039	Canola	cytosol	47.06	13.87
CDY26600	Canola	cytosol	47.06	13.87
Zm00001d017616_P001	Maize	extracellular	47.06	13.6
TraesCS6A01G259400.1	Wheat	cytosol	45.1	12.92
TraesCS6B01G286700.1	Wheat	cytosol	45.1	12.92
Os02t0682500-01	Rice	cytosol	43.14	12.39
HORVU0Hr1G016450.1	Barley	cytosol	45.1	12.2
CDY70647	Canola	cytosol	14.71	11.36
CDY65575	Canola	cytosol	14.71	11.36
GSMUA_Achr5P10240_001	Banana	nucleus	7.84	3.28
CDY70646	Canola	nucleus	0.0	0.0
CDY65574	Canola	nucleus	0.0	0.0
CDY39498	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY05439	EnsemblPlantsGene:GSBRNA2T00120345001	GO:A0A078EXY0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	ProteinID:CDY05439	ProteinID:CDY05439.1	SUPFAM:SSF50978
UniParc:UPI0002547220	MapMan:35.1	:	:	:	:

Description

BnaA02g32520D

Coordinates

chrLK031962:-:90563..91335

Molecular Weight (calculated)

11259.7 Da

IEP (calculated)

6.515

GRAVY (calculated)

0.022

Length

102 amino acids

Sequence
(BLAST)

001: MHGVTMGRTD TSGGAMWVGG GSADPSWGEA RVFASVSADG SVRIFDLRDK EHSTIKNRVE QAILEVHVDD YKVVILDIRL PTMPVAELER HRLMAIRVVL
101: MV

Best Arabidopsis Sequence Match ( AT5G24520.1 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.