Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05439 | Canola | cytosol | 100.0 | 100.0 |
| Bra029411.1-P | Field mustard | cytosol | 25.49 | 21.67 |
| Bra019798.1-P | Field mustard | extracellular | 13.73 | 20.9 |
| Bra009770.1-P | Field mustard | cytosol | 52.94 | 16.02 |
| GSMUA_Achr4P29160_001 | Banana | cytosol | 46.08 | 14.83 |
| EES05725 | Sorghum | cytosol | 45.1 | 14.47 |
| Zm00001d017616_P001 | Maize | extracellular | 47.06 | 13.6 |
| TraesCS6A01G259400.1 | Wheat | cytosol | 45.1 | 12.92 |
| TraesCS6B01G286700.1 | Wheat | cytosol | 45.1 | 12.92 |
| Bra026947.1-P | Field mustard | cytosol | 47.06 | 12.57 |
| Os02t0682500-01 | Rice | cytosol | 43.14 | 12.39 |
| HORVU0Hr1G016450.1 | Barley | cytosol | 45.1 | 12.2 |
| GSMUA_Achr5P10240_001 | Banana | nucleus | 7.84 | 3.28 |
Protein Annotations
| EnsemblPlants:Bra029410.1 | EnsemblPlants:Bra029410.1-P | EnsemblPlantsGene:Bra029410 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:WD40_repeat_dom_sf | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF2 | SUPFAM:SSF50978 | UniParc:UPI0002547220 | UniProt:M4EKU3 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT5G24520 (E=3e-011) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding
Coordinates
chrA02:+:25320460..25321232
Molecular Weight (calculated)
11259.7 Da
IEP (calculated)
6.515
GRAVY (calculated)
0.022
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGVTMGRTD TSGGAMWVGG GSADPSWGEA RVFASVSADG SVRIFDLRDK EHSTIKNRVE QAILEVHVDD YKVVILDIRL PTMPVAELER HRLMAIRVVL
101: MV
101: MV
001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
Arabidopsis Description
TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.