Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P29160_001 | Banana | cytosol | 47.13 | 36.28 |
| KRH64293 | Soybean | cytosol | 34.84 | 25.37 |
| VIT_16s0098g00870.t01 | Wine grape | nucleus | 34.84 | 25.3 |
| KRH53635 | Soybean | cytosol | 34.02 | 24.7 |
| Solyc03g097340.1.1 | Tomato | cytosol | 34.43 | 24.56 |
| PGSC0003DMT400068077 | Potato | cytosol | 34.43 | 24.56 |
| PGSC0003DMT400001513 | Potato | nucleus | 34.43 | 24.56 |
| EES05725 | Sorghum | cytosol | 31.15 | 23.9 |
| Os02t0682500-01 | Rice | cytosol | 34.02 | 23.38 |
| TraesCS6B01G286700.1 | Wheat | cytosol | 33.61 | 23.03 |
| TraesCS6A01G259400.1 | Wheat | cytosol | 33.2 | 22.75 |
| Bra009770.1-P | Field mustard | cytosol | 31.15 | 22.55 |
| AT5G24520.1 | Thale cress | cytosol | 31.15 | 22.29 |
| PGSC0003DMT400094468 | Potato | cytosol | 30.74 | 21.87 |
| Zm00001d017616_P001 | Maize | extracellular | 31.56 | 21.81 |
| HORVU0Hr1G016450.1 | Barley | cytosol | 33.61 | 21.75 |
| GSMUA_Achr10P... | Banana | cytosol | 25.0 | 21.11 |
| Solyc03g081210.1.1 | Tomato | cytosol | 29.1 | 20.76 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 27.46 | 19.59 |
| CDX80449 | Canola | cytosol | 11.07 | 11.34 |
| CDY05440 | Canola | cytosol | 4.92 | 10.0 |
| Bra029411.1-P | Field mustard | cytosol | 4.92 | 10.0 |
| CDY05439 | Canola | cytosol | 3.28 | 7.84 |
| Bra029410.1-P | Field mustard | cytosol | 3.28 | 7.84 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P10240_001 | EnsemblPlants:GSMUA_Achr5T10240_001 | EnsemblPlantsGene:GSMUA_Achr5G10240_001 | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF2 | SEG:seg |
| UniParc:UPI0002955954 | UniProt:M0SXA3 | MapMan:35.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G10240_001]
Coordinates
chr5:+:7303887..7307653
Molecular Weight (calculated)
25377.6 Da
IEP (calculated)
6.981
GRAVY (calculated)
-0.273
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSTQESPL NPNAFTFDLP HPVYAMAFSP SPFAVASSCS AVAAASPRLA LGSFVEEYGN RVDVVAFDED ALAFRPDPAL SFDHPYPPTK LMFHPSPLPP
101: LLASASDSLR LPAASAPPPS TPPAPSGTSS DAPSRPSSSP TTRRCTTSRG ARPASSHPCP PTAPFASSIS VIRSTLPSCT RAPARTPPCS ASPGTKDRPY
201: AGLHGRCGDQ PAAVVCCSPR LGWNRLLQQG AASEDLSPID DIQT
101: LLASASDSLR LPAASAPPPS TPPAPSGTSS DAPSRPSSSP TTRRCTTSRG ARPASSHPCP PTAPFASSIS VIRSTLPSCT RAPARTPPCS ASPGTKDRPY
201: AGLHGRCGDQ PAAVVCCSPR LGWNRLLQQG AASEDLSPID DIQT
001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
Arabidopsis Description
TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.