Factsheet for GSMUA_Achr5P20600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P19380_001
GSMUA_Achr3P07950_001
GSMUA_Achr3P27700_001
GSMUA_Achr4P29160_001
GSMUA_Achr5P06530_001
GSMUA_Achr5P10240_001
GSMUA_Achr5P20600_001
GSMUA_Achr6P14840_001
GSMUA_Achr7P13700_001
GSMUA_Achr8P11430_001
GSMUA_Achr8P19880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr5P20600_001	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr8P11430_001	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr10P...	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr2P19380_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr5P06530_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr6P14840_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr7P13700_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr3P07950_001	AT3G27920.1	12917293
AT1G63650.1	GSMUA_Achr3P27700_001	AT3G27920.1	12917293
AT1G63650.1	GSMUA_Achr3P07950_001	AT3G27920.1	15361138
AT1G63650.1	GSMUA_Achr3P27700_001	AT3G27920.1	15361138
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G14750.1	14627722
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G14750.1	14627722
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G14750.1	15361138
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G14750.1	15361138
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G14750.1	17644729
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G14750.1	17644729
AT1G63650.1	GSMUA_Achr4P29160_001	AT5G24520.1	12917293
AT1G63650.1	GSMUA_Achr5P10240_001	AT5G24520.1	12917293
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G40330.1	15361138
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G40330.1	15361138
AT1G63650.1	GSMUA_Achr8P19880_001	AT5G53200.1	12917293
AT1G63650.1	GSMUA_AchrUn_...	AT5G53200.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	45.58	56.9
GSMUA_Achr8P11430_001	Banana	nucleus	50.17	54.03
GSMUA_Achr11P...	Banana	nucleus	53.57	53.12
GSMUA_Achr11P...	Banana	nucleus	49.83	53.08
CDY45357	Canola	cytosol, golgi, nucleus	15.99	49.47
VIT_02s0025g03450.t01	Wine grape	nucleus	47.11	44.11
VIT_15s0046g02560.t01	Wine grape	nucleus	46.26	41.27
Os01t0577300-00	Rice	cytosol	8.33	40.16
HORVU2Hr1G096810.5	Barley	nucleus	36.9	38.68
TraesCS2D01G406900.1	Wheat	nucleus	37.07	38.45
KRH41187	Soybean	nucleus	41.16	38.41
TraesCS2A01G409600.2	Wheat	nucleus, plastid	36.39	38.35
TraesCS4B01G397400.1	Wheat	nucleus	36.73	38.3
CDY39747	Canola	nucleus	36.39	38.28
TraesCS5A01G489500.1	Wheat	nucleus	36.56	37.72
Solyc08g081140.2.1	Tomato	nucleus	40.14	37.7
KRH59908	Soybean	nucleus	40.31	37.56
CDY58950	Canola	nucleus	36.73	37.44
TraesCS2B01G428000.1	Wheat	nucleus	36.39	37.35
TraesCSU01G029400.1	Wheat	nucleus	36.05	37.06
TraesCS2A01G409400.1	Wheat	nucleus	35.71	36.97
TraesCSU01G116000.1	Wheat	nucleus	28.57	36.84
AT1G63650.1	Thale cress	nucleus	37.24	36.74
Os04t0557500-00	Rice	mitochondrion, plasma membrane	11.22	36.67
CDY25513	Canola	nucleus	35.88	36.57
Bra025508.1-P	Field mustard	nucleus	39.12	36.57
TraesCS5A01G558500.1	Wheat	nucleus	36.22	36.41
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	34.18	35.96
TraesCS2D01G406800.1	Wheat	plastid	28.23	35.7
Bra027796.1-P	Field mustard	nucleus	36.73	35.64
Bra027653.1-P	Field mustard	nucleus	35.88	35.4
CDY08314	Canola	nucleus	36.39	35.37
CDY34367	Canola	nucleus	35.71	35.23
AT5G41315.2	Thale cress	nucleus	38.61	35.19
TraesCS4D01G224600.1	Wheat	nucleus	33.16	35.01
KRH65046	Soybean	nucleus	38.44	34.93
TraesCS2D01G575600.3	Wheat	nucleus, plastid	34.86	34.8
KRH48144	Soybean	nucleus	38.44	34.77
PGSC0003DMT400032140	Potato	nucleus	21.26	34.72
Os04t0557800-00	Rice	mitochondrion	33.84	34.67
OQU82120	Sorghum	nucleus	34.35	34.35
TraesCS4B01G397800.1	Wheat	nucleus	29.76	34.31
OQU82117	Sorghum	nucleus	34.01	33.9
TraesCS4B01G397300.1	Wheat	nucleus	23.13	33.42
Zm00001d000236_P001	Maize	nucleus, plastid	31.63	33.39
OQU81560	Sorghum	nucleus	33.16	33.11
Zm00001d026147_P002	Maize	nucleus	34.01	32.47
TraesCSU01G228400.1	Wheat	nucleus	20.07	32.15
TraesCSU01G237100.1	Wheat	nucleus	20.07	32.15
CDY72121	Canola	nucleus	16.67	31.82
CDX91907	Canola	nucleus	29.42	31.8
CDY70506	Canola	nucleus	28.74	31.65
CDY51155	Canola	mitochondrion, nucleus	29.08	31.55
GSMUA_Achr3P17620_001	Banana	nucleus	30.1	31.38
CDY07214	Canola	mitochondrion, nucleus	28.74	31.18
GSMUA_Achr6P21490_001	Banana	nucleus	32.99	29.8
AT4G00480.2	Thale cress	nucleus	29.25	29.66
OQU82119	Sorghum	nucleus	25.68	27.66
Os01t0576100-00	Rice	nucleus	14.63	27.39
Os11t0258700-00	Rice	mitochondrion	21.43	26.09
Bra000970.1-P	Field mustard	nucleus	28.74	25.84
CDX77694	Canola	nucleus	9.86	22.92
Bra037343.1-P	Field mustard	cytosol	26.87	22.22
GSMUA_Achr10P...	Banana	nucleus	17.01	21.79
GSMUA_Achr2P08590_001	Banana	nucleus	9.52	21.05
GSMUA_Achr8P05170_001	Banana	nucleus	6.97	20.4
GSMUA_Achr4P03160_001	Banana	nucleus	11.22	20.18
GSMUA_Achr3P30620_001	Banana	nucleus	11.05	20.06
GSMUA_Achr10P...	Banana	nucleus	13.61	20.05
GSMUA_Achr9P20820_001	Banana	nucleus	12.41	19.84
GSMUA_Achr7P27600_001	Banana	nucleus	11.22	19.76
GSMUA_Achr8P05350_001	Banana	nucleus	14.97	19.51
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	15.65	19.37
GSMUA_Achr3P26180_001	Banana	nucleus	9.69	19.32
GSMUA_Achr3P00370_001	Banana	plastid	14.46	19.32
GSMUA_Achr7P00800_001	Banana	cytosol	7.65	19.23
GSMUA_Achr11P...	Banana	nucleus	14.63	19.2
GSMUA_Achr1P28110_001	Banana	nucleus	15.99	18.91
GSMUA_Achr7P14640_001	Banana	nucleus	15.48	18.8
GSMUA_Achr8P26280_001	Banana	cytosol	14.8	18.79
GSMUA_Achr7P04720_001	Banana	nucleus	14.8	18.55
GSMUA_Achr6P35730_001	Banana	nucleus	15.48	18.53
GSMUA_Achr4P16980_001	Banana	nucleus	15.82	18.34
GSMUA_Achr1P18910_001	Banana	nucleus	12.07	18.02
GSMUA_AchrUn_...	Banana	cytosol	15.65	17.8
GSMUA_Achr4P23070_001	Banana	nucleus	9.35	17.57
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	16.84	17.22
GSMUA_Achr8P26460_001	Banana	nucleus	9.69	17.17
GSMUA_Achr2P18140_001	Banana	nucleus	13.27	16.81
GSMUA_AchrUn_...	Banana	nucleus	8.84	16.15
GSMUA_Achr11P...	Banana	nucleus	13.1	16.01
GSMUA_Achr8P14720_001	Banana	nucleus	15.82	15.9
GSMUA_Achr5P18100_001	Banana	nucleus	13.1	15.75
GSMUA_Achr4P03170_001	Banana	nucleus	8.33	14.37
GSMUA_Achr4P14580_001	Banana	nucleus	7.82	13.86
GSMUA_Achr1P08130_001	Banana	mitochondrion	11.9	12.54

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr5G20600_001	EnsemblPlants:GSMUA_Achr5P20600_001	EnsemblPlants:GSMUA_Achr5T20600_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0T089	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF38	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002954773	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor GLABRA 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G20600_001]

Coordinates

chr5:+:22414764..22425223

Molecular Weight (calculated)

66357.0 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.425

Length

588 amino acids

Sequence
(BLAST)

001: MQFVGNAIHI DIIKSVLEWC GGFYNGQIKT RKMIQPIELE ADQMSLQRSE QLRELYESLS SGDSNQQMRR ACAALYPEDL TDAEWYYLTC MSFVFNIGQG
101: LPGKAFADNQ HIWLNGAQFA NCKMFSRSLL AKSASIQTVV CIPIMDGVLE LGTNDLILED PAIIEKITSS PWELPNPICS EQSISGRRMA ENDEDHLCPN
201: LDNNIDDCID LEDQNLIVDP QTQLGNGSSD GSLNDGCPTQ KVEDAFGVDG LNDISQTQSR QFIDDEFSNV LHGYLDCDVH EPMSFRSLSR IVPLDLDGDD
301: SHSAKTVAVI LQNSKHVKPV SSYPKISHKS SFATWRIDMN PPKPFTSMSQ KLLKKLLVDI TWLHDGRLQR HQENGMQEKT CKPEGESDVR HVLSERRRRE
401: KLKEKFLVLR SLIPSISKVD KASVLGNTID YLKDLERRVL ELESSQEPAE LEIAESRKHP DVAKRSSENY RNKEIVNGEN SLAKKRKVSD VDRSNAEHLW
501: ILTKDRPIEV NVTLKDKEVL VEMHCPWRES LVFEIVESIS NLHLDLLSVQ SSTVDGMLSL AIKSKFRSTS VASPGMIKQS LQRVMGLL

Best Arabidopsis Sequence Match ( AT5G41315.2 )
(BLAST)

001: MGYRDEETMA TGQNRTTVPE NLKKHLAVSV RNIQWSYGIF WSVSASQSGV LEWGDGYYNG DIKTRKTIQA SEIKADQLGL RRSEQLSELY ESLSVAESSS
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.