Factsheet for GSMUA_Achr10P14030_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P17620_001
GSMUA_Achr5P20600_001
GSMUA_Achr6P21490_001
GSMUA_Achr8P11430_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	GSMUA_Achr11P...	AT1G63650.1	15361138
AT3G13540.1	GSMUA_Achr11P...	AT1G63650.1	15361138
AT3G13540.1	GSMUA_Achr11P...	AT1G63650.1	15361138
AT3G13540.1	GSMUA_Achr5P20600_001	AT1G63650.1	15361138
AT3G13540.1	GSMUA_Achr8P11430_001	AT1G63650.1	15361138
AT3G13540.1	GSMUA_Achr3P17620_001	AT4G09820.1	15361138
AT3G13540.1	GSMUA_Achr6P21490_001	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14840_001	Banana	nucleus	68.46	70.34
GSMUA_Achr2P19380_001	Banana	nucleus	48.66	59.43
CDY23616	Canola	nucleus	41.61	54.39
GSMUA_AchrUn_...	Banana	nucleus	26.85	53.69
AT3G13540.1	Thale cress	nucleus	43.62	52.21
CDY24177	Canola	nucleus	43.96	52.19
CDY07085	Canola	nucleus	43.62	51.79
GSMUA_Achr11P...	Banana	nucleus	28.86	51.5
Bra039395.1-P	Field mustard	nucleus	43.29	51.39
CDY59254	Canola	nucleus	43.96	51.37
Bra027423.1-P	Field mustard	nucleus	43.62	50.98
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	53.36	50.96
GSMUA_Achr2P20600_001	Banana	nucleus	29.19	49.71
GSMUA_Achr9P24180_001	Banana	nucleus	28.52	49.13
TraesCS3D01G257800.1	Wheat	nucleus	43.29	47.6
TraesCS3A01G257800.1	Wheat	nucleus	42.28	47.55
TraesCS3B01G290600.1	Wheat	nucleus	42.95	47.06
VIT_08s0007g07230.t01	Wine grape	nucleus	50.0	46.56
Solyc01g005660.1.1	Tomato	nucleus, plastid	47.99	46.43
Zm00001d011645_P001	Maize	nucleus	35.57	46.09
GSMUA_Achr5P06530_001	Banana	nucleus	57.72	45.87
Os01t0695900-01	Rice	nucleus	42.28	45.82
GSMUA_AchrUn_...	Banana	nucleus	28.52	43.81
HORVU0Hr1G006810.2	Barley	nucleus	39.26	43.66
GSMUA_Achr1P02420_001	Banana	nucleus	28.19	43.08
GSMUA_Achr7P13700_001	Banana	nucleus	44.3	43.0
GSMUA_Achr5P26000_001	Banana	nucleus	29.87	42.38
KRH17997	Soybean	nucleus, plastid	50.34	42.37
KXG33190	Sorghum	nucleus	39.6	42.14
GSMUA_Achr6P07260_001	Banana	mitochondrion	27.85	41.71
GSMUA_Achr4P25710_001	Banana	nucleus	26.85	41.67
GSMUA_Achr8P32480_001	Banana	nucleus	27.85	41.5
GSMUA_Achr8P33900_001	Banana	nucleus	28.19	41.38
GSMUA_Achr10P...	Banana	nucleus	29.87	41.01
KRH16413	Soybean	nucleus	49.33	40.72
GSMUA_Achr10P...	Banana	nucleus	27.18	39.32
GSMUA_Achr3P07950_001	Banana	nucleus	30.87	38.66
GSMUA_Achr3P22200_001	Banana	nucleus	27.85	38.25
GSMUA_Achr6P09620_001	Banana	nucleus	25.5	38.0
GSMUA_Achr1P26520_001	Banana	nucleus	30.54	37.76
GSMUA_Achr6P25420_001	Banana	nucleus	29.87	37.55
GSMUA_Achr1P07550_001	Banana	nucleus	28.86	36.29
GSMUA_Achr5P17010_001	Banana	nucleus	28.19	34.85
GSMUA_Achr11P...	Banana	nucleus	27.18	34.47
GSMUA_Achr3P21000_001	Banana	nucleus	29.19	34.25
GSMUA_Achr9P16040_001	Banana	nucleus	28.86	33.46
GSMUA_Achr9P08600_001	Banana	nucleus	30.2	33.09
GSMUA_Achr9P27380_001	Banana	nucleus	28.86	33.08
GSMUA_Achr4P21700_001	Banana	nucleus	25.5	32.76
GSMUA_Achr3P27700_001	Banana	nucleus	29.87	32.48
GSMUA_Achr5P01180_001	Banana	nucleus	28.19	32.31
GSMUA_Achr8P14540_001	Banana	nucleus	27.85	31.92
GSMUA_Achr2P17960_001	Banana	nucleus	27.52	31.78
GSMUA_Achr6P04400_001	Banana	nucleus	28.86	31.27
GSMUA_Achr3P07940_001	Banana	nucleus	29.53	31.21
GSMUA_Achr6P12930_001	Banana	nucleus	29.87	31.12
GSMUA_Achr10P...	Banana	nucleus	28.86	30.94
GSMUA_Achr7P18560_001	Banana	nucleus	27.85	30.86
GSMUA_Achr10P...	Banana	nucleus	29.19	30.63
GSMUA_Achr8P22690_001	Banana	nucleus	29.53	30.34
GSMUA_Achr7P18550_001	Banana	nucleus	26.85	30.3
GSMUA_AchrUn_...	Banana	nucleus	28.52	26.56
GSMUA_Achr5P21250_001	Banana	nucleus	28.19	26.17
GSMUA_Achr6P02530_001	Banana	nucleus	27.85	22.99
GSMUA_Achr8P10470_001	Banana	nucleus	27.85	22.37

Protein Annotations

EnsemblPlants:GSMUA_Achr10P14030_001	EnsemblPlants:GSMUA_Achr10T14030_001	EnsemblPlantsGene:GSMUA_Achr10G14030_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF740	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002964451	UniProt:M0RI29	MapMan:15.5.2.1	:	:

Description

Transcription repressor MYB5 [Source:GMGC_GENE;Acc:GSMUA_Achr10G14030_001]

Coordinates

chr10:-:22432437..22433589

Molecular Weight (calculated)

33075.3 Da

IEP (calculated)

6.104

GRAVY (calculated)

-0.853

Length

298 amino acids

Sequence
(BLAST)

001: MRNPSQSSAP GSSSTAAVEV EGRRRGGPTP CCSKVGLKRG PWTPEEDEVL ASFVRREGEG RWRTLPKRAG LRRCGKSCRL RWMNYLRPSI KHGPIAPDEE
101: DLILRLHRLL GNRWSLIAGR IPGRTDNEIK NYWNTHLSKK LISQGIDPRT HKPLASSTPD AIQQPLAPPS YTNPNPSTRS FSDRQNLQHD DDDDDEGWRN
201: NELLDDDIFS SFLDSLINED AFQLQHNVSN NDDNIILDNT INNNNSGNGN NQEMQPAGAS TAPSGPVCGF GTFWEAGFVG QIGLEEGVHE QFADHAGK

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.