Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 34.45 | 55.03 |
| GSMUA_Achr11P... | Banana | nucleus | 35.29 | 50.3 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 36.13 | 49.71 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 36.13 | 49.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.55 | 44.85 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 37.82 | 44.34 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 36.13 | 44.1 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 36.97 | 44.0 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 35.71 | 42.71 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 41.26 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 44.96 | 41.15 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 33.19 | 41.15 |
| GSMUA_Achr10P... | Banana | nucleus | 37.4 | 41.01 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 35.71 | 40.48 |
| CDX69561 | Canola | nucleus | 33.19 | 40.1 |
| Bra008740.1-P | Field mustard | nucleus | 33.19 | 40.1 |
| GSMUA_Achr9P16040_001 | Banana | nucleus | 43.28 | 40.08 |
| CDY09882 | Canola | nucleus | 33.19 | 39.9 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 45.8 | 39.64 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 36.13 | 39.63 |
| Bra022602.1-P | Field mustard | nucleus | 32.77 | 39.39 |
| CDY27055 | Canola | nucleus | 32.77 | 39.39 |
| CDY65324 | Canola | nucleus | 33.19 | 38.92 |
| CDX91023 | Canola | nucleus | 32.35 | 38.89 |
| CDX85583 | Canola | nucleus | 32.35 | 38.89 |
| GSMUA_Achr10P... | Banana | nucleus | 45.38 | 38.85 |
| Bra023486.1-P | Field mustard | nucleus | 30.67 | 38.83 |
| AT5G52600.1 | Thale cress | nucleus | 32.77 | 38.81 |
| AT5G14750.1 | Thale cress | nucleus | 32.77 | 38.42 |
| CDY51833 | Canola | nucleus | 31.93 | 38.19 |
| Bra029113.1-P | Field mustard | nucleus | 31.51 | 37.69 |
| CDY56151 | Canola | nucleus | 31.51 | 37.69 |
| GSMUA_Achr6P09620_001 | Banana | nucleus | 31.51 | 37.5 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 37.82 | 37.34 |
| GSMUA_Achr3P07940_001 | Banana | nucleus | 43.7 | 36.88 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 33.61 | 36.87 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 42.44 | 36.86 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 36.55 | 36.71 |
| GSMUA_Achr4P21700_001 | Banana | nucleus | 35.71 | 36.64 |
| Solyc07g008010.2.1 | Tomato | nucleus | 32.35 | 36.49 |
| CDY66972 | Canola | nucleus | 30.25 | 36.0 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 35.71 | 35.87 |
| PGSC0003DMT400079416 | Potato | nucleus | 32.35 | 35.81 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 36.13 | 35.68 |
| VIT_11s0016g05660.t01 | Wine grape | nucleus | 33.19 | 35.43 |
| GSMUA_Achr8P22690_001 | Banana | nucleus | 42.86 | 35.17 |
| GSMUA_Achr11P... | Banana | nucleus | 34.45 | 34.89 |
| VIT_17s0000g08480.t01 | Wine grape | nucleus | 31.51 | 34.72 |
| AT5G40330.1 | Thale cress | nucleus | 31.93 | 34.7 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 39.08 | 34.57 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 38.24 | 34.47 |
| GSMUA_Achr3P21000_001 | Banana | nucleus | 36.13 | 33.86 |
| GSMUA_Achr2P17960_001 | Banana | nucleus | 36.13 | 33.33 |
| VIT_11s0016g05690.t01 | Wine grape | nucleus | 30.67 | 32.74 |
| VIT_01s0127g00730.t01 | Wine grape | nucleus | 30.25 | 32.73 |
| AT3G27920.1 | Thale cress | nucleus | 31.09 | 32.46 |
| Bra025311.1-P | Field mustard | nucleus | 30.67 | 32.44 |
| CDX86461 | Canola | nucleus | 30.67 | 32.44 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 33.19 | 32.38 |
| GSMUA_Achr8P14540_001 | Banana | nucleus | 35.29 | 32.31 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 36.55 | 31.99 |
| Bra039065.1-P | Field mustard | nucleus | 26.47 | 31.66 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 38.24 | 31.38 |
| GSMUA_Achr10P... | Banana | nucleus | 38.66 | 30.87 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 36.97 | 30.77 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 33.19 | 30.38 |
| Bra025589.1-P | Field mustard | nucleus | 31.93 | 29.8 |
| CDY44571 | Canola | nucleus | 31.93 | 29.8 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 36.97 | 28.66 |
| GSMUA_Achr10P... | Banana | nucleus | 34.03 | 28.52 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 37.82 | 28.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.55 | 27.19 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 37.4 | 24.65 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 36.55 | 23.2 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 35.71 | 22.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P07950_001 | EnsemblPlants:GSMUA_Achr3T07950_001 | EnsemblPlantsGene:GSMUA_Achr3G07950_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF459 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00029551DF | UniProt:M0SCR2 | MapMan:15.5.2.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G07950_001]
Coordinates
chr3:+:5529381..5530261
Molecular Weight (calculated)
26918.9 Da
IEP (calculated)
6.168
GRAVY (calculated)
-0.523
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKPCCAKE TDLKRGAWTA EEDGILEAYI KTHGEGRWRS LPKKAGLKRC GKSCRLRWLN YLRPDIKRGN ISLEEEDLII RLHKLIGNRW SLIAGRLPGR
101: TDNEIKNYWN TYLRKKVQNQ HEPAVVLSSL HHFVQVSREG DLVAVSEAEK APESVPGESF SILTEGNWWD LLMSSDAGEA ASAVQVPHLN LVSLCGDDSR
201: CDLYAANEGM LEDWMCDPAQ TSLDRELESL ARFLHCDD
101: TDNEIKNYWN TYLRKKVQNQ HEPAVVLSSL HHFVQVSREG DLVAVSEAEK APESVPGESF SILTEGNWWD LLMSSDAGEA ASAVQVPHLN LVSLCGDDSR
201: CDLYAANEGM LEDWMCDPAQ TSLDRELESL ARFLHCDD
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.