Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 79.07 | 80.0 |
| GSMUA_Achr3P25090_001 | Banana | nucleus | 46.51 | 65.57 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 40.7 | 64.81 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 51.16 | 64.71 |
| CDY60128 | Canola | cytosol | 53.49 | 58.97 |
| CDX89217 | Canola | cytosol | 53.49 | 58.97 |
| CDY60125 | Canola | cytosol | 53.49 | 58.97 |
| CDY58661 | Canola | nucleus | 48.84 | 56.76 |
| AT2G30432.1 | Thale cress | nucleus | 53.49 | 54.76 |
| CDX84835 | Canola | nucleus | 53.49 | 54.12 |
| CDY24000 | Canola | nucleus | 53.49 | 54.12 |
| CDY38733 | Canola | nucleus | 66.28 | 53.77 |
| AT5G53200.1 | Thale cress | nucleus | 66.28 | 53.77 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 55.81 | 52.75 |
| CDY19688 | Canola | nucleus | 65.12 | 52.34 |
| CDY19687 | Canola | nucleus | 65.12 | 52.34 |
| Bra022637.1-P | Field mustard | nucleus | 45.35 | 52.0 |
| CDY47058 | Canola | nucleus | 63.95 | 51.89 |
| AT2G30420.1 | Thale cress | nucleus | 61.63 | 47.32 |
| AT2G30424.1 | Thale cress | nucleus | 54.65 | 47.0 |
| GSMUA_Achr10P... | Banana | nucleus | 36.05 | 43.66 |
| GSMUA_Achr1P05080_001 | Banana | nucleus | 45.35 | 39.39 |
| GSMUA_Achr9P11590_001 | Banana | nucleus | 34.88 | 37.97 |
| GSMUA_Achr5P09460_001 | Banana | plastid | 44.19 | 24.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P19880_001 | EnsemblPlants:GSMUA_Achr8T19880_001 | EnsemblPlantsGene:GSMUA_Achr8G19880_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF620 | PFAM:PF00249 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002956C7D | UniProt:M0TRZ1 | MapMan:15.5.2.2 | : | : |
Description
Transcription factor TRY [Source:GMGC_GENE;Acc:GSMUA_Achr8G19880_001]
Coordinates
chr8:+:25012047..25013064
Molecular Weight (calculated)
10581.6 Da
IEP (calculated)
10.652
GRAVY (calculated)
-1.190
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MDNRRKKQRR ASSRRESQEV SSVEWQFINM TEQEEDLIYR MYRLVGDRWD IIAGRIPGRK PEEIERFWIM RHGEGFAAAR RYGKYR
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.