CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24000	Canola	nucleus	92.94	92.94
AT2G30432.1	Thale cress	nucleus	74.12	75.0
CDY60125	Canola	cytosol	57.65	62.82
CDY60128	Canola	cytosol	57.65	62.82
CDX89217	Canola	cytosol	56.47	61.54
CDY14264	Canola	cytosol, extracellular, nucleus	48.24	60.29
AT2G30424.1	Thale cress	nucleus	70.59	60.0
GSMUA_AchrUn_...	Banana	nucleus	56.47	56.47
AT2G30420.1	Thale cress	nucleus	72.94	55.36
GSMUA_Achr8P19880_001	Banana	nucleus	54.12	53.49
CDY58661	Canola	nucleus	45.88	52.7
VIT_15s0046g01130.t01	Wine grape	nucleus	54.12	52.27
CDX97235	Canola	cytosol, mitochondrion, nucleus	47.06	51.95
CDY01951	Canola	nucleus	47.06	51.95
PGSC0003DMT400000600	Potato	nucleus	37.65	51.61
KRH77639	Soybean	cytosol	48.24	51.25
VIT_16s0050g02530.t01	Wine grape	nucleus	52.94	51.14
CDX95700	Canola	nucleus	50.59	50.0
CDY42045	Canola	nucleus	50.59	50.0
CDY38006	Canola	cytosol, nucleus, peroxisome	48.24	50.0
CDY27324	Canola	nucleus	50.59	50.0
CDX80016	Canola	nucleus	50.59	50.0
KRH27851	Soybean	cytosol	47.06	50.0
CDX83366	Canola	nucleus	50.59	50.0
CDY66317	Canola	nucleus	49.41	48.84
CDY38733	Canola	nucleus	60.0	48.11
CDY47058	Canola	nucleus	60.0	48.11
CDX91873	Canola	nucleus	42.35	47.37
CDX74365	Canola	nucleus	42.35	47.37
CDY07170	Canola	nucleus	43.53	46.84
CDY19688	Canola	nucleus	57.65	45.79
CDY19687	Canola	nucleus	57.65	45.79
Solyc01g095640.1.1	Tomato	nucleus	50.59	45.74
CDY52811	Canola	nucleus	43.53	43.53
HORVU3Hr1G055260.2	Barley	nucleus	38.82	43.42
Zm00001d044194_P001	Maize	nucleus	38.82	42.31
CDY48500	Canola	nucleus	40.0	41.98
EES03290	Sorghum	nucleus	37.65	41.03
CDY27018	Canola	nucleus	4.71	11.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:A0A078D6U0	EnsemblPlants:CDX84835	ProteinID:CDX84835	ProteinID:CDX84835.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00142148001	InterPro:Homeobox-like_sf
InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF00249	PFscan:PS50090	PANTHER:PTHR10641	PANTHER:PTHR10641:SF631
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEB0BF	:	:

Description

BnaA03g13950D

Coordinates

chrLK031838:+:1488400..1490155

Molecular Weight (calculated)

10390.3 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.952

Length

85 amino acids

Sequence
(BLAST)

1: MDDTNRLHRL RSHKQTKFIR YNSEEVTSIK WEFINMTEQE EDLISRMYRL VGNRWDLIAG RVAGRSASEI ERYWIMKNND YFSNK

Best Arabidopsis Sequence Match ( AT2G30420.1 )
(BLAST)

001: MDNTNRLRLR RGPSLRQTKF TRSRYDSEEV SSIEWEFISM TEQEEDLISR MYRLVGNRWD LIAGRVVGRK ANEIERYWIM RNSDYFSHKR RRLNNSPFFS
101: TSPLNLQENL KL

Arabidopsis Description

ETC2MYB-like transcription factor ETC2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.