Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60125 | Canola | cytosol | 80.88 | 70.51 |
| CDY60128 | Canola | cytosol | 80.88 | 70.51 |
| CDX89217 | Canola | cytosol | 79.41 | 69.23 |
| KRH77639 | Soybean | cytosol | 61.76 | 52.5 |
| PGSC0003DMT400000600 | Potato | nucleus | 47.06 | 51.61 |
| KRH27851 | Soybean | cytosol | 60.29 | 51.25 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 64.71 | 51.16 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 63.24 | 48.86 |
| CDY24000 | Canola | nucleus | 60.29 | 48.24 |
| CDX84835 | Canola | nucleus | 60.29 | 48.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.29 | 48.24 |
| CDY58661 | Canola | nucleus | 51.47 | 47.3 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 60.29 | 46.59 |
| CDX91873 | Canola | nucleus | 51.47 | 46.05 |
| CDX74365 | Canola | nucleus | 51.47 | 46.05 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 51.47 | 45.45 |
| CDY01951 | Canola | nucleus | 51.47 | 45.45 |
| CDY07170 | Canola | nucleus | 50.0 | 43.04 |
| CDY66317 | Canola | nucleus | 54.41 | 43.02 |
| CDX80016 | Canola | nucleus | 54.41 | 43.02 |
| CDY42045 | Canola | nucleus | 54.41 | 43.02 |
| CDY27324 | Canola | nucleus | 54.41 | 43.02 |
| CDX95700 | Canola | nucleus | 52.94 | 41.86 |
| CDX83366 | Canola | nucleus | 52.94 | 41.86 |
| Solyc01g095640.1.1 | Tomato | nucleus | 57.35 | 41.49 |
| CDY47058 | Canola | nucleus | 63.24 | 40.57 |
| CDY38733 | Canola | nucleus | 63.24 | 40.57 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 48.53 | 40.24 |
| CDY48500 | Canola | nucleus | 47.06 | 39.51 |
| CDY19688 | Canola | nucleus | 61.76 | 39.25 |
| CDY19687 | Canola | nucleus | 61.76 | 39.25 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 42.65 | 38.16 |
| EES03290 | Sorghum | nucleus | 41.18 | 35.9 |
| Zm00001d044194_P001 | Maize | nucleus | 41.18 | 35.9 |
| CDY52811 | Canola | nucleus | 44.12 | 35.29 |
| CDY27018 | Canola | nucleus | 5.88 | 11.43 |
Protein Annotations
| EnsemblPlants:CDY14264 | EnsemblPlantsGene:GSBRNA2T00078846001 | Gene3D:1.10.10.60 | GO:A0A078FMZ9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| PFAM:PF00249 | ProteinID:CDY14264 | ProteinID:CDY14264.1 | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDD88D |
| UniProt:A0A078FMZ9 | MapMan:15.5.2.2 | : | : | : | : |
Description
BnaA08g13950DBnaA08g13950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMZ9]
Coordinates
chrLK032041:+:519504..521328
Molecular Weight (calculated)
8185.0 Da
IEP (calculated)
9.214
GRAVY (calculated)
-0.413
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MNAEVCSVEW KFINMSEQEE DLILRMYRLV GDRWEIIAGR VPGRKAVEIE RYWIMRKNKH IFLPSSKS
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.