Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 98.7 | 98.7 |
| CDX91873 | Canola | nucleus | 84.42 | 85.53 |
| CDX74365 | Canola | nucleus | 83.12 | 84.21 |
| CDY07170 | Canola | nucleus | 77.92 | 75.95 |
| AT4G01060.1 | Thale cress | nucleus | 75.32 | 75.32 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 70.13 | 65.85 |
| CDY48500 | Canola | nucleus | 68.83 | 65.43 |
| CDY27324 | Canola | nucleus | 66.23 | 59.3 |
| CDY66317 | Canola | nucleus | 64.94 | 58.14 |
| CDX95700 | Canola | nucleus | 64.94 | 58.14 |
| CDX83366 | Canola | nucleus | 64.94 | 58.14 |
| CDX80016 | Canola | nucleus | 63.64 | 56.98 |
| CDY42045 | Canola | nucleus | 63.64 | 56.98 |
| CDY52811 | Canola | nucleus | 62.34 | 56.47 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 45.45 | 51.47 |
| CDY60125 | Canola | cytosol | 49.35 | 48.72 |
| CDY60128 | Canola | cytosol | 49.35 | 48.72 |
| CDX89217 | Canola | cytosol | 48.05 | 47.44 |
| CDX84835 | Canola | nucleus | 51.95 | 47.06 |
| CDY24000 | Canola | nucleus | 51.95 | 47.06 |
| CDY38733 | Canola | nucleus | 57.14 | 41.51 |
| CDY47058 | Canola | nucleus | 55.84 | 40.57 |
| CDY19688 | Canola | nucleus | 55.84 | 40.19 |
| CDY19687 | Canola | nucleus | 55.84 | 40.19 |
| CDY58661 | Canola | nucleus | 37.66 | 39.19 |
| CDY27018 | Canola | nucleus | 3.9 | 8.57 |
Protein Annotations
| EnsemblPlants:CDY01951 | EnsemblPlantsGene:GSBRNA2T00113232001 | Gene3D:1.10.10.60 | GO:A0A078ELB2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| PFAM:PF00249 | ProteinID:CDY01951 | ProteinID:CDY01951.1 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0004EBD98A | MapMan:15.5.2.2 | : | : | : | : |
Description
BnaC02g27760D
Coordinates
chrLK031930:+:751244..751946
Molecular Weight (calculated)
8971.7 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.725
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKHLRTKQT KTSPIVASSS SQEVSSIEWE ALNMNQEEED LVCRMHKLVG DRWELIAGRI PGRTAQEIER FWVMKNN
1: MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVSRMHKLV GDRWELIAGR IPGRTAGEIE RFWVMKN
Arabidopsis Description
ETC3CAPRICE-like MYB3 [Source:TAIR;Acc:AT4G01060]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.