CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60128	Canola	cytosol	100.0	100.0
CDX89217	Canola	cytosol	98.72	98.72
Bra026297.1-P	Field mustard	cytosol, nucleus, peroxisome	67.95	98.15
CDY14264	Canola	cytosol, extracellular, nucleus	70.51	80.88
CDY24000	Canola	nucleus	64.1	58.82
CDX84835	Canola	nucleus	62.82	57.65
GSMUA_AchrUn_...	Banana	nucleus	58.97	54.12
GSMUA_Achr8P19880_001	Banana	nucleus	58.97	53.49
PGSC0003DMT400000600	Potato	nucleus	42.31	53.23
KRH77639	Soybean	cytosol	52.56	51.25
VIT_16s0050g02530.t01	Wine grape	nucleus	56.41	50.0
KRH27851	Soybean	cytosol	51.28	50.0
CDY01951	Canola	nucleus	48.72	49.35
CDX97235	Canola	cytosol, mitochondrion, nucleus	48.72	49.35
VIT_15s0046g01130.t01	Wine grape	nucleus	55.13	48.86
CDY58661	Canola	nucleus	46.15	48.65
CDY27324	Canola	nucleus	52.56	47.67
CDX80016	Canola	nucleus	52.56	47.67
CDY42045	Canola	nucleus	52.56	47.67
CDX74365	Canola	nucleus	46.15	47.37
CDX91873	Canola	nucleus	46.15	47.37
CDX83366	Canola	nucleus	51.28	46.51
CDY66317	Canola	nucleus	51.28	46.51
CDY38006	Canola	cytosol, nucleus, peroxisome	48.72	46.34
CDX95700	Canola	nucleus	50.0	45.35
CDY38733	Canola	nucleus	61.54	45.28
CDY47058	Canola	nucleus	61.54	45.28
Solyc01g095640.1.1	Tomato	nucleus	53.85	44.68
CDY07170	Canola	nucleus	43.59	43.04
CDY19688	Canola	nucleus	58.97	42.99
CDY19687	Canola	nucleus	58.97	42.99
CDY52811	Canola	nucleus	43.59	40.0
EES03290	Sorghum	nucleus	39.74	39.74
Zm00001d044194_P001	Maize	nucleus	39.74	39.74
HORVU3Hr1G055260.2	Barley	nucleus	38.46	39.47
CDY48500	Canola	nucleus	38.46	37.04
CDY27018	Canola	nucleus	7.69	17.14

Protein Annotations

EnsemblPlants:CDY60125	EnsemblPlantsGene:GSBRNA2T00028218001	Gene3D:1.10.10.60	GO:A0A078J2S4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:SANT/Myb	PANTHER:PTHR10641	PANTHER:PTHR10641:SF631
PFAM:PF00249	ProteinID:CDY60125	ProteinID:CDY60125.1	ProteinID:CDY60128.1	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0001CADEE6	UniProt:A0A078J2S4	MapMan:15.5.2.2	:	:	:

Description

BnaCnng35720DBnaCnng35720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2S4]

Coordinates

chrLK033846:+:10515..11959

Molecular Weight (calculated)

9532.5 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.769

Length

78 amino acids

Sequence
(BLAST)

1: MDSTYRRQRH NSEEVCSVKW DFIKMSQQEE DLILRMYRLV GDRWEIIAGR VPGRKAVEIE RYWIMRNNTH FLPPSSKF

Best Arabidopsis Sequence Match ( AT5G53200.1 )
(BLAST)

001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS

Arabidopsis Description

TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.