Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80016 | Canola | nucleus | 95.35 | 95.35 |
| CDY42045 | Canola | nucleus | 95.35 | 95.35 |
| CDY66317 | Canola | nucleus | 94.19 | 94.19 |
| CDX83366 | Canola | nucleus | 93.02 | 93.02 |
| CDX95700 | Canola | nucleus | 91.86 | 91.86 |
| CDY01951 | Canola | nucleus | 59.3 | 66.23 |
| CDX74365 | Canola | nucleus | 58.14 | 65.79 |
| CDX91873 | Canola | nucleus | 58.14 | 65.79 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 58.14 | 64.94 |
| CDY07170 | Canola | nucleus | 55.81 | 60.76 |
| CDY48500 | Canola | nucleus | 52.33 | 55.56 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 52.33 | 54.88 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 43.02 | 54.41 |
| CDX89217 | Canola | cytosol | 47.67 | 52.56 |
| CDY60128 | Canola | cytosol | 47.67 | 52.56 |
| CDY60125 | Canola | cytosol | 47.67 | 52.56 |
| CDY58661 | Canola | nucleus | 44.19 | 51.35 |
| CDX84835 | Canola | nucleus | 50.0 | 50.59 |
| CDY38733 | Canola | nucleus | 61.63 | 50.0 |
| CDY47058 | Canola | nucleus | 61.63 | 50.0 |
| CDY19688 | Canola | nucleus | 61.63 | 49.53 |
| CDY19687 | Canola | nucleus | 61.63 | 49.53 |
| CDY24000 | Canola | nucleus | 47.67 | 48.24 |
| CDY52811 | Canola | nucleus | 47.67 | 48.24 |
| CDY27018 | Canola | nucleus | 3.49 | 8.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078GQ39 | UniProt:A0A078GQ39 | EnsemblPlants:CDY27324 | ProteinID:CDY27324 |
| ProteinID:CDY27324.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00037260001 |
| InterPro:Homeobox-like_sf | PFAM:PF00249 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF620 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0004EF4C41 | SEG:seg | : | : | : |
Description
BnaC04g50810DBnaC04g50810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ39]
Coordinates
chrLK032203:+:74909..75716
Molecular Weight (calculated)
10343.5 Da
IEP (calculated)
10.055
GRAVY (calculated)
-0.923
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MDRRRRKQSK AKASCSEAEV SSIEWEAVKM SEEEEDLISR MYKLVGDRWE LIAGRIPGRT PEEIERYWLM KHGLVFANKR REFVRR
1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK
Arabidopsis Description
CPCTranscription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.