CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08314
CDY25513
CDY34367
CDY72121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53200.1	CDY08314	AT1G63650.1	12917293
AT5G53200.1	CDY25513	AT1G63650.1	12917293
AT5G53200.1	CDY34367	AT1G63650.1	12917293
AT5G53200.1	CDY72121	AT1G63650.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19687	Canola	nucleus	100.0	100.0
CDY47058	Canola	nucleus	79.44	80.19
CDY38733	Canola	nucleus	79.44	80.19
AT5G53200.1	Thale cress	nucleus	77.57	78.3
CDY58661	Canola	nucleus	53.27	77.03
PGSC0003DMT400000600	Potato	nucleus	40.19	69.35
GSMUA_Achr8P19880_001	Banana	nucleus	52.34	65.12
VIT_16s0050g02530.t01	Wine grape	nucleus	53.27	64.77
GSMUA_AchrUn_...	Banana	nucleus	51.4	64.71
VIT_15s0046g01130.t01	Wine grape	nucleus	52.34	63.64
CDY14264	Canola	cytosol, extracellular, nucleus	39.25	61.76
CDY66317	Canola	nucleus	49.53	61.63
CDY27324	Canola	nucleus	49.53	61.63
CDX89217	Canola	cytosol	43.93	60.26
CDX80016	Canola	nucleus	47.66	59.3
CDX83366	Canola	nucleus	47.66	59.3
CDY42045	Canola	nucleus	47.66	59.3
CDY60125	Canola	cytosol	42.99	58.97
CDY60128	Canola	cytosol	42.99	58.97
CDX95700	Canola	nucleus	46.73	58.14
CDX84835	Canola	nucleus	45.79	57.65
CDY24000	Canola	nucleus	45.79	57.65
Solyc01g095640.1.1	Tomato	nucleus	49.53	56.38
CDX97235	Canola	cytosol, mitochondrion, nucleus	40.19	55.84
CDY01951	Canola	nucleus	40.19	55.84
KRH77639	Soybean	cytosol	41.12	55.0
KRH27851	Soybean	cytosol	40.19	53.75
CDX74365	Canola	nucleus	36.45	51.32
CDX91873	Canola	nucleus	36.45	51.32
CDY38006	Canola	cytosol, nucleus, peroxisome	39.25	51.22
CDY07170	Canola	nucleus	37.38	50.63
HORVU3Hr1G055260.2	Barley	nucleus	32.71	46.05
CDY48500	Canola	nucleus	34.58	45.68
CDY52811	Canola	nucleus	35.51	44.71
EES03290	Sorghum	nucleus	28.97	39.74
Zm00001d044194_P001	Maize	nucleus	28.04	38.46
CDY27018	Canola	nucleus	2.8	8.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:A0A078G3V4	UniProt:A0A078G3V4	ProteinID:CDY19687.1	EnsemblPlants:CDY19688
ProteinID:CDY19688	ProteinID:CDY19688.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00009408001	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF00249	PFscan:PS50090
PANTHER:PTHR10641	PANTHER:PTHR10641:SF631	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EDD6C1
SEG:seg	:	:	:	:	:

Description

BnaC09g29440DBnaC09g29430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3V4]

Coordinates

chrLK032099:+:526927..527956

Molecular Weight (calculated)

13055.3 Da

IEP (calculated)

10.145

GRAVY (calculated)

-1.307

Length

107 amino acids

Sequence
(BLAST)

001: MDNTDRRRRR KQHKATLHDS EEVSSIEWEF INMTEQEEDL IFRMHRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSDGFA EKRRQLHHSS SHKSTKPHRP
101: RFSIYPS

Best Arabidopsis Sequence Match ( AT5G53200.1 )
(BLAST)

001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS

Arabidopsis Description

TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.