Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38733 | Canola | nucleus | 89.62 | 89.62 |
| CDY58661 | Canola | nucleus | 62.26 | 89.19 |
| CDY47058 | Canola | nucleus | 88.68 | 88.68 |
| CDY19687 | Canola | nucleus | 78.3 | 77.57 |
| CDY19688 | Canola | nucleus | 78.3 | 77.57 |
| PGSC0003DMT400000600 | Potato | nucleus | 39.62 | 67.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.77 | 67.06 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 55.66 | 67.05 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 53.77 | 66.28 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 54.72 | 65.91 |
| AT2G30432.1 | Thale cress | nucleus | 47.17 | 59.52 |
| Solyc01g095640.1.1 | Tomato | nucleus | 50.0 | 56.38 |
| AT2G30420.1 | Thale cress | nucleus | 59.43 | 56.25 |
| KRH77639 | Soybean | cytosol | 40.57 | 53.75 |
| AT4G01060.1 | Thale cress | nucleus | 38.68 | 53.25 |
| AT2G46410.1 | Thale cress | nucleus | 47.17 | 53.19 |
| AT1G01380.1 | Thale cress | cytosol, nucleus, plastid | 41.51 | 53.01 |
| AT2G30424.1 | Thale cress | nucleus | 50.0 | 53.0 |
| KRH27851 | Soybean | cytosol | 39.62 | 52.5 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 32.08 | 44.74 |
| EES03290 | Sorghum | nucleus | 29.25 | 39.74 |
| Zm00001d044194_P001 | Maize | nucleus | 28.3 | 38.46 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | EntrezGene:835401 | UniProt:A0A178UFU9 | ProteinID:AED96321.1 | ArrayExpress:AT5G53200 |
| EnsemblPlantsGene:AT5G53200 | RefSeq:AT5G53200 | TAIR:AT5G53200 | RefSeq:AT5G53200-TAIR-G | EnsemblPlants:AT5G53200.1 | TAIR:AT5G53200.1 |
| EMBL:AY161286 | EMBL:AY519523 | ProteinID:BAB08423.1 | EMBL:BT024672 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010091 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_200132.2 | ProteinID:OAO92575.1 |
| PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000263 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50090 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| UniProt:Q8GV05 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | Symbol:TRY | UniParc:UPI00000AE16E |
Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
Coordinates
chr5:+:21582614..21584243
Molecular Weight (calculated)
13006.3 Da
IEP (calculated)
9.993
GRAVY (calculated)
-1.244
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.