Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G30432.1 | Thale cress | nucleus | 68.0 | 80.95 |
| CDX84835 | Canola | nucleus | 60.0 | 70.59 |
| CDY24000 | Canola | nucleus | 59.0 | 69.41 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 34.0 | 62.96 |
| PGSC0003DMT400000600 | Potato | nucleus | 37.0 | 59.68 |
| AT2G30420.1 | Thale cress | nucleus | 64.0 | 57.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.0 | 56.47 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 47.0 | 54.65 |
| KRH27851 | Soybean | cytosol | 41.0 | 51.25 |
| KRH77639 | Soybean | cytosol | 41.0 | 51.25 |
| Solyc01g095640.1.1 | Tomato | nucleus | 48.0 | 51.06 |
| AT4G01060.1 | Thale cress | nucleus | 39.0 | 50.65 |
| AT5G53200.1 | Thale cress | nucleus | 53.0 | 50.0 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 44.0 | 50.0 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 44.0 | 50.0 |
| AT1G01380.1 | Thale cress | cytosol, nucleus, plastid | 37.0 | 44.58 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 33.0 | 43.42 |
| AT2G46410.1 | Thale cress | nucleus | 39.0 | 41.49 |
| Zm00001d044194_P001 | Maize | nucleus | 30.0 | 38.46 |
| EES03290 | Sorghum | nucleus | 29.0 | 37.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | EntrezGene:6240858 | UniProt:A0A178VT13 | ProteinID:ADC36207.1 | ProteinID:ADC36209.1 |
| ProteinID:ADC36210.1 | ProteinID:ADC36211.1 | ProteinID:AEC08386.1 | ArrayExpress:AT2G30424 | EnsemblPlantsGene:AT2G30424 | RefSeq:AT2G30424 |
| TAIR:AT2G30424 | RefSeq:AT2G30424-TAIR-G | EnsemblPlants:AT2G30424.1 | TAIR:AT2G30424.1 | UniProt:B3H4X8 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 | GO:GO:0007267 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| GO:GO:0045892 | GO:GO:0048629 | GO:GO:1900033 | InterPro:Homeobox-like_sf | RefSeq:NP_001118417.1 | ProteinID:OAP09587.1 |
| PFAM:PF00249 | PO:PO:0000293 | PO:PO:0020030 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | Symbol:TCL2 | EMBL:U93215 | UniParc:UPI00017391A0 | : |
Description
TCL2MYB-like transcription factor TCL2 [Source:UniProtKB/Swiss-Prot;Acc:B3H4X8]
Coordinates
chr2:-:12964383..12965723
Molecular Weight (calculated)
12219.7 Da
IEP (calculated)
10.600
GRAVY (calculated)
-0.911
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MDNTNRLRHL RSRKQSKFTL GDTAEVNSVK WEFINMTEQE EDLIFRMHRL VGDRWDLIAG RVVGREAKDI ERYWIMRNCD HCSHKRRRVH KFYRFSISPP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.