Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- peroxisome 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89217 | Canola | cytosol | 100.0 | 69.23 |
| CDY60128 | Canola | cytosol | 98.15 | 67.95 |
| CDY60125 | Canola | cytosol | 98.15 | 67.95 |
| PGSC0003DMT400000600 | Potato | nucleus | 62.96 | 54.84 |
| Bra022637.1-P | Field mustard | nucleus | 68.52 | 49.33 |
| KRH77639 | Soybean | cytosol | 62.96 | 42.5 |
| AT2G30432.1 | Thale cress | nucleus | 64.81 | 41.67 |
| KRH27851 | Soybean | cytosol | 61.11 | 41.25 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 64.81 | 40.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.96 | 40.0 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 64.81 | 39.77 |
| Bra008539.1-P | Field mustard | cytosol, mitochondrion, nucleus | 55.56 | 38.96 |
| Bra004539.1-P | Field mustard | nucleus | 61.11 | 38.82 |
| Bra039283.1-P | Field mustard | nucleus | 61.11 | 38.82 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 62.96 | 38.64 |
| Bra000941.1-P | Field mustard | nucleus | 53.7 | 38.16 |
| Bra037388.1-P | Field mustard | nucleus | 51.85 | 36.36 |
| Solyc01g095640.1.1 | Tomato | nucleus | 62.96 | 36.17 |
| Bra032635.1-P | Field mustard | cytosol, nucleus, peroxisome | 53.7 | 35.37 |
| AT2G30424.1 | Thale cress | nucleus | 62.96 | 34.0 |
| AT2G30420.1 | Thale cress | nucleus | 68.52 | 33.04 |
| EES03290 | Sorghum | nucleus | 46.3 | 32.05 |
| Zm00001d044194_P001 | Maize | nucleus | 46.3 | 32.05 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 44.44 | 31.58 |
Protein Annotations
| EnsemblPlants:Bra026297.1 | EnsemblPlants:Bra026297.1-P | EnsemblPlantsGene:Bra026297 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002543F25 | UniProt:M4EBY8 | MapMan:15.5.2.2 | : | : | : |
Description
AT5G53200 (E=5e-017) TRY | TRY (TRIPTYCHON); DNA binding / transcription factor
Coordinates
chrA01:-:10154163..10154829
Molecular Weight (calculated)
6507.9 Da
IEP (calculated)
9.919
GRAVY (calculated)
-0.493
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MSQQEEDLIL RMYRLVGDRW EIIAGRVPGR KAVEIERYWI MRNSTHFLPP SSKF
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.