Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400032140 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53200.1 | PGSC0003DMT400032140 | AT1G63650.1 | 12917293 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g095640.1.1 | Tomato | nucleus | 100.0 | 65.96 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 54.84 | 62.96 |
| CDY58661 | Canola | nucleus | 69.35 | 58.11 |
| Bra022637.1-P | Field mustard | nucleus | 62.9 | 52.0 |
| KRH77639 | Soybean | cytosol | 66.13 | 51.25 |
| KRH27851 | Soybean | cytosol | 64.52 | 50.0 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 67.74 | 47.73 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 51.61 | 47.06 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 62.9 | 44.32 |
| CDX89217 | Canola | cytosol | 54.84 | 43.59 |
| CDY60125 | Canola | cytosol | 53.23 | 42.31 |
| CDY60128 | Canola | cytosol | 53.23 | 42.31 |
| CDY38733 | Canola | nucleus | 69.35 | 40.57 |
| AT2G30432.1 | Thale cress | nucleus | 54.84 | 40.48 |
| CDY19687 | Canola | nucleus | 69.35 | 40.19 |
| CDY19688 | Canola | nucleus | 69.35 | 40.19 |
| CDY47058 | Canola | nucleus | 67.74 | 39.62 |
| AT5G53200.1 | Thale cress | nucleus | 67.74 | 39.62 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 58.06 | 39.56 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 48.39 | 39.47 |
| CDX84835 | Canola | nucleus | 51.61 | 37.65 |
| AT2G30424.1 | Thale cress | nucleus | 59.68 | 37.0 |
| CDY24000 | Canola | nucleus | 50.0 | 36.47 |
| EES03290 | Sorghum | nucleus | 45.16 | 35.9 |
| Zm00001d044194_P001 | Maize | nucleus | 43.55 | 34.62 |
| AT2G30420.1 | Thale cress | nucleus | 61.29 | 33.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400000600 | EnsemblPlantsGene:PGSC0003DMG400000212 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF620 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG400000212 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000296AD70 | UniProt:M0ZH05 | MapMan:15.5.2.2 | : | : | : |
Description
Triptychon and cpc [Source:PGSC_GENE;Acc:PGSC0003DMG400000212]
Coordinates
chr1:-:73235459..73236438
Molecular Weight (calculated)
7376.0 Da
IEP (calculated)
10.945
GRAVY (calculated)
-0.829
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MSKQEEDLIY RMHKLVGDRW GLIAGRIPGR TAEEIERFWI MRHSDGFAHK RRQTIKKSLP PT
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.