CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84835	Canola	nucleus	92.94	92.94
AT2G30432.1	Thale cress	nucleus	72.94	73.81
CDY60125	Canola	cytosol	58.82	64.1
CDY60128	Canola	cytosol	58.82	64.1
CDX89217	Canola	cytosol	57.65	62.82
CDY14264	Canola	cytosol, extracellular, nucleus	48.24	60.29
AT2G30424.1	Thale cress	nucleus	69.41	59.0
GSMUA_AchrUn_...	Banana	nucleus	56.47	56.47
AT2G30420.1	Thale cress	nucleus	71.76	54.46
GSMUA_Achr8P19880_001	Banana	nucleus	54.12	53.49
VIT_15s0046g01130.t01	Wine grape	nucleus	54.12	52.27
CDX97235	Canola	cytosol, mitochondrion, nucleus	47.06	51.95
CDY01951	Canola	nucleus	47.06	51.95
CDY58661	Canola	nucleus	44.71	51.35
VIT_16s0050g02530.t01	Wine grape	nucleus	52.94	51.14
KRH77639	Soybean	cytosol	47.06	50.0
PGSC0003DMT400000600	Potato	nucleus	36.47	50.0
CDX95700	Canola	nucleus	50.59	50.0
CDY38006	Canola	cytosol, nucleus, peroxisome	48.24	50.0
CDX83366	Canola	nucleus	50.59	50.0
CDY42045	Canola	nucleus	49.41	48.84
CDX80016	Canola	nucleus	49.41	48.84
KRH27851	Soybean	cytosol	45.88	48.75
CDY38733	Canola	nucleus	60.0	48.11
CDY47058	Canola	nucleus	60.0	48.11
CDY66317	Canola	nucleus	48.24	47.67
CDY27324	Canola	nucleus	48.24	47.67
CDX91873	Canola	nucleus	42.35	47.37
CDX74365	Canola	nucleus	42.35	47.37
CDY07170	Canola	nucleus	43.53	46.84
CDY19688	Canola	nucleus	57.65	45.79
CDY19687	Canola	nucleus	57.65	45.79
Solyc01g095640.1.1	Tomato	nucleus	49.41	44.68
CDY52811	Canola	nucleus	43.53	43.53
HORVU3Hr1G055260.2	Barley	nucleus	38.82	43.42
Zm00001d044194_P001	Maize	nucleus	38.82	42.31
CDY48500	Canola	nucleus	40.0	41.98
EES03290	Sorghum	nucleus	37.65	41.03
CDY27018	Canola	nucleus	4.71	11.43

Protein Annotations

EnsemblPlants:CDY24000	EnsemblPlantsGene:GSBRNA2T00024517001	Gene3D:1.10.10.60	GO:A0A078GC02	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:SANT/Myb	PANTHER:PTHR10641	PANTHER:PTHR10641:SF631
PFAM:PF00249	ProteinID:CDY24000	ProteinID:CDY24000.1	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EB1B13
UniProt:A0A078GC02	MapMan:15.5.2.2	:	:	:	:

Description

BnaC03g16910DBnaC03g16910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC02]

Coordinates

chrLK032152:+:427352..428950

Molecular Weight (calculated)

10475.5 Da

IEP (calculated)

10.276

GRAVY (calculated)

-1.029

Length

85 amino acids

Sequence
(BLAST)

1: MDDTNRLRRL RSHKHTKFIR HNSEEVTSIK WEFINMTEQE EDLISRMYRL VGNRWDLIAG RVAGRRASEI ERYWIMKNND YFSKQ

Best Arabidopsis Sequence Match ( AT2G30432.1 )
(BLAST)

1: MDNTNRLRRL HCHKQPKFTH SSQEVSSMKW EFINMTEQEE DLIFRMYRLV GDRWDLIARR VVGREAKEIE RYWIMRNCDY FSHK

Arabidopsis Description

TCL1TCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV20]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.