Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004539.1-P | Field mustard | nucleus | 98.84 | 100.0 |
| CDY42045 | Canola | nucleus | 100.0 | 100.0 |
| CDY27324 | Canola | nucleus | 95.35 | 95.35 |
| CDX83366 | Canola | nucleus | 93.02 | 93.02 |
| CDX95700 | Canola | nucleus | 91.86 | 91.86 |
| CDY66317 | Canola | nucleus | 90.7 | 90.7 |
| AT2G46410.1 | Thale cress | nucleus | 91.86 | 84.04 |
| CDY01951 | Canola | nucleus | 56.98 | 63.64 |
| CDX91873 | Canola | nucleus | 55.81 | 63.16 |
| CDX74365 | Canola | nucleus | 55.81 | 63.16 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 55.81 | 62.34 |
| CDY07170 | Canola | nucleus | 53.49 | 58.23 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 52.33 | 54.88 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 43.02 | 54.41 |
| CDY48500 | Canola | nucleus | 50.0 | 53.09 |
| CDX89217 | Canola | cytosol | 47.67 | 52.56 |
| CDY60128 | Canola | cytosol | 47.67 | 52.56 |
| CDY60125 | Canola | cytosol | 47.67 | 52.56 |
| CDY58661 | Canola | nucleus | 44.19 | 51.35 |
| CDX84835 | Canola | nucleus | 50.0 | 50.59 |
| CDY24000 | Canola | nucleus | 48.84 | 49.41 |
| CDY52811 | Canola | nucleus | 47.67 | 48.24 |
| CDY38733 | Canola | nucleus | 59.3 | 48.11 |
| CDY47058 | Canola | nucleus | 59.3 | 48.11 |
| CDY19688 | Canola | nucleus | 59.3 | 47.66 |
| CDY19687 | Canola | nucleus | 59.3 | 47.66 |
| CDY27018 | Canola | nucleus | 3.49 | 8.57 |
Protein Annotations
| EnsemblPlants:CDX80016 | EnsemblPlantsGene:GSBRNA2T00132894001 | Gene3D:1.10.10.60 | GO:A0A078HU76 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF620 |
| PFAM:PF00249 | ProteinID:CDX80016 | ProteinID:CDX80016.1 | ProteinID:CDY42045.1 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0004EF3017 | UniProt:A0A078HU76 | MapMan:15.5.2.2 | : | : |
Description
BnaA05g01400DBnaA05g01400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU76]
Coordinates
chrLK031819:-:1333566..1334208
Molecular Weight (calculated)
10380.5 Da
IEP (calculated)
10.101
GRAVY (calculated)
-0.927
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MDRRRRRHSK AKASCSEAEV SSIEWEAVKM SEEEEDLISR MYKLVGDRWE LIAGRIPGRT PEEIERYWLM KHGVVFANKR REFLRR
1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK
Arabidopsis Description
CPCTranscription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.