CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86891
CDX99505
CDY08314
CDY25513
CDY34367
CDY72121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46410.1	CDY08314	AT1G63650.1	12917293
AT2G46410.1	CDY25513	AT1G63650.1	12917293
AT2G46410.1	CDY34367	AT1G63650.1	12917293
AT2G46410.1	CDY72121	AT1G63650.1	12917293
AT2G46410.1	CDY08314	AT1G63650.1	14627722
AT2G46410.1	CDY25513	AT1G63650.1	14627722
AT2G46410.1	CDY34367	AT1G63650.1	14627722
AT2G46410.1	CDY72121	AT1G63650.1	14627722
AT2G46410.1	CDY08314	AT1G63650.1	15361138
AT2G46410.1	CDY25513	AT1G63650.1	15361138
AT2G46410.1	CDY34367	AT1G63650.1	15361138
AT2G46410.1	CDY72121	AT1G63650.1	15361138
AT2G46410.1	CDX86891	AT4G09820.1	15361138
AT2G46410.1	CDX99505	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83366	Canola	nucleus	98.84	98.84
CDX80016	Canola	nucleus	91.86	91.86
CDY42045	Canola	nucleus	91.86	91.86
CDY27324	Canola	nucleus	91.86	91.86
CDY66317	Canola	nucleus	87.21	87.21
AT2G46410.1	Thale cress	nucleus	91.86	84.04
CDY01951	Canola	nucleus	58.14	64.94
CDX74365	Canola	nucleus	56.98	64.47
CDX91873	Canola	nucleus	56.98	64.47
CDX97235	Canola	cytosol, mitochondrion, nucleus	56.98	63.64
CDY07170	Canola	nucleus	54.65	59.49
CDY38006	Canola	cytosol, nucleus, peroxisome	52.33	54.88
CDY48500	Canola	nucleus	51.16	54.32
CDY14264	Canola	cytosol, extracellular, nucleus	41.86	52.94
CDX84835	Canola	nucleus	50.0	50.59
CDY24000	Canola	nucleus	50.0	50.59
CDX89217	Canola	cytosol	45.35	50.0
CDY58661	Canola	nucleus	43.02	50.0
CDY60125	Canola	cytosol	45.35	50.0
CDY60128	Canola	cytosol	45.35	50.0
CDY52811	Canola	nucleus	48.84	49.41
CDY38733	Canola	nucleus	58.14	47.17
CDY47058	Canola	nucleus	58.14	47.17
CDY19688	Canola	nucleus	58.14	46.73
CDY19687	Canola	nucleus	58.14	46.73
CDY27018	Canola	nucleus	2.33	5.71

Protein Annotations

EnsemblPlants:CDX95700	EnsemblPlantsGene:GSBRNA2T00101593001	Gene3D:1.10.10.60	GO:A0A078E1S1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:SANT/Myb	PANTHER:PTHR10641	PANTHER:PTHR10641:SF620
PFAM:PF00249	ProteinID:CDX95700	ProteinID:CDX95700.1	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE02A4
MapMan:15.5.2.2	:	:	:	:	:

Description

BnaC03g25810D

Coordinates

chrLK031890:-:714559..715243

Molecular Weight (calculated)

10307.3 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.883

Length

86 amino acids

Sequence
(BLAST)

1: MDRRRHRQSK AKASCSEAEV SSIEWEAVKM TEEEEDLISR MYKLVGDRWE LIAGRIPGRT PEEIERYWLM KHGVVFANRP RDFVRR

Best Arabidopsis Sequence Match ( AT2G46410.1 )
(BLAST)

1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK

Arabidopsis Description

CPCTranscription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.