Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01380.1 | CDY08314 | AT1G63650.1 | 15361138 |
| AT1G01380.1 | CDY25513 | AT1G63650.1 | 15361138 |
| AT1G01380.1 | CDY34367 | AT1G63650.1 | 15361138 |
| AT1G01380.1 | CDY72121 | AT1G63650.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032635.1-P | Field mustard | cytosol, nucleus, peroxisome | 100.0 | 100.0 |
| AT1G01380.1 | Thale cress | cytosol, nucleus, plastid | 86.59 | 85.54 |
| CDY52811 | Canola | nucleus | 85.37 | 82.35 |
| CDY01951 | Canola | nucleus | 65.85 | 70.13 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 64.63 | 68.83 |
| CDX74365 | Canola | nucleus | 62.2 | 67.11 |
| CDX91873 | Canola | nucleus | 62.2 | 67.11 |
| CDY07170 | Canola | nucleus | 62.2 | 64.56 |
| CDY48500 | Canola | nucleus | 56.1 | 56.79 |
| CDY66317 | Canola | nucleus | 54.88 | 52.33 |
| CDY42045 | Canola | nucleus | 54.88 | 52.33 |
| CDY27324 | Canola | nucleus | 54.88 | 52.33 |
| CDX95700 | Canola | nucleus | 54.88 | 52.33 |
| CDX83366 | Canola | nucleus | 54.88 | 52.33 |
| CDX80016 | Canola | nucleus | 54.88 | 52.33 |
| CDX89217 | Canola | cytosol | 46.34 | 48.72 |
| CDY60125 | Canola | cytosol | 46.34 | 48.72 |
| CDY60128 | Canola | cytosol | 46.34 | 48.72 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 40.24 | 48.53 |
| CDY24000 | Canola | nucleus | 50.0 | 48.24 |
| CDX84835 | Canola | nucleus | 50.0 | 48.24 |
| CDY38733 | Canola | nucleus | 54.88 | 42.45 |
| CDY47058 | Canola | nucleus | 54.88 | 42.45 |
| CDY58661 | Canola | nucleus | 37.8 | 41.89 |
| CDY19687 | Canola | nucleus | 51.22 | 39.25 |
| CDY19688 | Canola | nucleus | 51.22 | 39.25 |
| CDY27018 | Canola | nucleus | 3.66 | 8.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078HK25 | UniProt:A0A078HK25 | EnsemblPlants:CDY38006 | ProteinID:CDY38006 |
| ProteinID:CDY38006.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00065061001 |
| InterPro:Homeobox-like_sf | PFAM:PF00249 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002543107 | SEG:seg | : | : | : |
Description
BnaCnng08670DBnaCnng08670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK25]
Coordinates
chrLK032414:+:59645..60365
Molecular Weight (calculated)
9653.5 Da
IEP (calculated)
8.498
GRAVY (calculated)
-0.732
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKQRKSKHP KTNAYATIVS SSSEEVSSLE WEEIAMTQEE EDLICRMYKL VGERWDLIAG RIPGRTAQVI ERFWVMKNHR RA
1: MNTQRKSKHL KTNPTIVASS SEEVSSLEWE EIAMAQEEED LICRMYKLVG ERWDLIAGRI PGRTAEEIER FWVMKNHRRS QLR
Arabidopsis Description
ETC1MYB-like transcription factor ETC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNI5]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.