Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032635.1-P | Field mustard | cytosol, nucleus, peroxisome | 85.54 | 86.59 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 85.54 | 86.59 |
| CDY52811 | Canola | nucleus | 83.13 | 81.18 |
| AT4G01060.1 | Thale cress | nucleus | 61.45 | 66.23 |
| AT2G46410.1 | Thale cress | nucleus | 54.22 | 47.87 |
| AT2G30432.1 | Thale cress | nucleus | 48.19 | 47.62 |
| AT5G53200.1 | Thale cress | nucleus | 53.01 | 41.51 |
| AT2G30420.1 | Thale cress | nucleus | 50.6 | 37.5 |
| AT2G30424.1 | Thale cress | nucleus | 44.58 | 37.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | EntrezGene:838096 | UniProt:A0A178WDR4 | ProteinID:AAF97342.1 | ProteinID:AEE27280.1 |
| ArrayExpress:AT1G01380 | EnsemblPlantsGene:AT1G01380 | RefSeq:AT1G01380 | TAIR:AT1G01380 | RefSeq:AT1G01380-TAIR-G | EnsemblPlants:AT1G01380.1 |
| TAIR:AT1G01380.1 | EMBL:AY519518 | Symbol:ETC1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0007154 | GO:GO:0007267 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0080147 |
| GO:GO:1900033 | InterPro:Homeobox-like_sf | RefSeq:NP_171645.1 | ProteinID:OAP16560.1 | PFAM:PF00249 | PO:PO:0000037 |
| PO:PO:0000263 | PO:PO:0000293 | PO:PO:0009005 | PO:PO:0020100 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| UniProt:Q9LNI5 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A68FE | SEG:seg |
Description
ETC1MYB-like transcription factor ETC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNI5]
Coordinates
chr1:+:147043..148014
Molecular Weight (calculated)
9831.8 Da
IEP (calculated)
7.523
GRAVY (calculated)
-0.780
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MNTQRKSKHL KTNPTIVASS SEEVSSLEWE EIAMAQEEED LICRMYKLVG ERWDLIAGRI PGRTAEEIER FWVMKNHRRS QLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.