Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01380.1 | CDY08314 | AT1G63650.1 | 15361138 |
| AT1G01380.1 | CDY25513 | AT1G63650.1 | 15361138 |
| AT1G01380.1 | CDY34367 | AT1G63650.1 | 15361138 |
| AT1G01380.1 | CDY72121 | AT1G63650.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 82.35 | 85.37 |
| AT1G01380.1 | Thale cress | cytosol, nucleus, plastid | 81.18 | 83.13 |
| CDY01951 | Canola | nucleus | 56.47 | 62.34 |
| CDY07170 | Canola | nucleus | 57.65 | 62.03 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 55.29 | 61.04 |
| CDX74365 | Canola | nucleus | 54.12 | 60.53 |
| CDX91873 | Canola | nucleus | 54.12 | 60.53 |
| CDY48500 | Canola | nucleus | 50.59 | 53.09 |
| CDX83366 | Canola | nucleus | 49.41 | 48.84 |
| CDX95700 | Canola | nucleus | 49.41 | 48.84 |
| CDY66317 | Canola | nucleus | 48.24 | 47.67 |
| CDY42045 | Canola | nucleus | 48.24 | 47.67 |
| CDY27324 | Canola | nucleus | 48.24 | 47.67 |
| CDX80016 | Canola | nucleus | 48.24 | 47.67 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 35.29 | 44.12 |
| CDX89217 | Canola | cytosol | 40.0 | 43.59 |
| CDY60125 | Canola | cytosol | 40.0 | 43.59 |
| CDY60128 | Canola | cytosol | 40.0 | 43.59 |
| CDY24000 | Canola | nucleus | 43.53 | 43.53 |
| CDX84835 | Canola | nucleus | 43.53 | 43.53 |
| CDY38733 | Canola | nucleus | 48.24 | 38.68 |
| CDY47058 | Canola | nucleus | 48.24 | 38.68 |
| CDY58661 | Canola | nucleus | 32.94 | 37.84 |
| CDY19688 | Canola | nucleus | 44.71 | 35.51 |
| CDY19687 | Canola | nucleus | 44.71 | 35.51 |
| CDY27018 | Canola | nucleus | 3.53 | 8.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078ISJ1 | UniProt:A0A078ISJ1 | EnsemblPlants:CDY52811 | ProteinID:CDY52811 |
| ProteinID:CDY52811.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00007881001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF631 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE59CE | SEG:seg |
Description
BnaCnng23500DBnaCnng23500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISJ1]
Coordinates
chrLK033132:+:72509..72982
Molecular Weight (calculated)
10076.0 Da
IEP (calculated)
9.197
GRAVY (calculated)
-0.900
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKQSKPKHP KTNAYATSVA SSSEEVSSLE WEEIAMTQEE DELICRMYKL VRQRWDLIAG RIPGRTAEQI ERFWVLKNHR RSQLR
1: MNTQRKSKHL KTNPTIVASS SEEVSSLEWE EIAMAQEEED LICRMYKLVG ERWDLIAGRI PGRTAEEIER FWVMKNHRRS QLR
Arabidopsis Description
ETC1MYB-like transcription factor ETC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNI5]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.