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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69561
CDX72770
CDX80016
CDX80085
CDX80449
CDX83366
CDX85583
CDX86461
CDX91023
CDX95420
CDX95700
CDX96151
CDX96296
CDY03705
CDY05440
CDY07085
CDY08314
CDY09882
CDY19687
CDY19688
CDY23616
CDY24177
CDY25513
CDY27504
CDY34367
CDY38006
CDY38733
CDY42045
CDY44571
CDY47058
CDY49630
CDY52811
CDY53214
CDY55040
CDY58386
CDY58661
CDY59254
CDY70737
CDY72006
CDY72121
CDY72660

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63650.1 CDY38006 AT1G01380.1 15361138
AT1G63650.1 CDY52811 AT1G01380.1 15361138
AT1G63650.1 CDX96151 AT1G56650.1 12917293
AT1G63650.1 CDY49630 AT1G56650.1 12917293
AT1G63650.1 CDY53214 AT1G56650.1 12917293
AT1G63650.1 CDY55040 AT1G56650.1 12917293
AT1G63650.1 CDY58386 AT1G56650.1 12917293
AT1G63650.1 CDY70737 AT1G56650.1 12917293
AT1G63650.1 CDY72006 AT1G56650.1 12917293
AT1G63650.1 CDY72660 AT1G56650.1 12917293
AT1G63650.1 CDX96151 AT1G56650.1 15361138
AT1G63650.1 CDY49630 AT1G56650.1 15361138
AT1G63650.1 CDY53214 AT1G56650.1 15361138
AT1G63650.1 CDY55040 AT1G56650.1 15361138
AT1G63650.1 CDY58386 AT1G56650.1 15361138
AT1G63650.1 CDY70737 AT1G56650.1 15361138
AT1G63650.1 CDY72006 AT1G56650.1 15361138
AT1G63650.1 CDY72660 AT1G56650.1 15361138
AT1G63650.1 CDY08314 AT1G63650.1 12917293
AT1G63650.1 CDY25513 AT1G63650.1 12917293
AT1G63650.1 CDY34367 AT1G63650.1 12917293
AT1G63650.1 CDY72121 AT1G63650.1 12917293
AT1G63650.1 CDX96151 AT1G66370.1 15361138
AT1G63650.1 CDY49630 AT1G66370.1 15361138
AT1G63650.1 CDY53214 AT1G66370.1 15361138
AT1G63650.1 CDY55040 AT1G66370.1 15361138
AT1G63650.1 CDY58386 AT1G66370.1 15361138
AT1G63650.1 CDY70737 AT1G66370.1 15361138
AT1G63650.1 CDY72006 AT1G66370.1 15361138
AT1G63650.1 CDY72660 AT1G66370.1 15361138
AT1G63650.1 CDX96151 AT1G66380.1 15361138
AT1G63650.1 CDY49630 AT1G66380.1 15361138
AT1G63650.1 CDY53214 AT1G66380.1 15361138
AT1G63650.1 CDY55040 AT1G66380.1 15361138
AT1G63650.1 CDY58386 AT1G66380.1 15361138
AT1G63650.1 CDY70737 AT1G66380.1 15361138
AT1G63650.1 CDY72006 AT1G66380.1 15361138
AT1G63650.1 CDY72660 AT1G66380.1 15361138
AT1G63650.1 CDX96151 AT1G66390.1 12917293
AT1G63650.1 CDY49630 AT1G66390.1 12917293
AT1G63650.1 CDY53214 AT1G66390.1 12917293
AT1G63650.1 CDY55040 AT1G66390.1 12917293
AT1G63650.1 CDY58386 AT1G66390.1 12917293
AT1G63650.1 CDY70737 AT1G66390.1 12917293
AT1G63650.1 CDY72006 AT1G66390.1 12917293
AT1G63650.1 CDY72660 AT1G66390.1 12917293
AT1G63650.1 CDX96151 AT1G66390.1 15361138
AT1G63650.1 CDY49630 AT1G66390.1 15361138
AT1G63650.1 CDY53214 AT1G66390.1 15361138
AT1G63650.1 CDY55040 AT1G66390.1 15361138
AT1G63650.1 CDY58386 AT1G66390.1 15361138
AT1G63650.1 CDY70737 AT1G66390.1 15361138
AT1G63650.1 CDY72006 AT1G66390.1 15361138
AT1G63650.1 CDY72660 AT1G66390.1 15361138
AT1G63650.1 CDX72770 AT1G71030.1 15361138
AT1G63650.1 CDX96296 AT1G71030.1 15361138
AT1G63650.1 CDY03705 AT1G71030.1 15361138
AT1G63650.1 CDX80016 AT2G46410.1 12917293
AT1G63650.1 CDX83366 AT2G46410.1 12917293
AT1G63650.1 CDX95700 AT2G46410.1 12917293
AT1G63650.1 CDY42045 AT2G46410.1 12917293
AT1G63650.1 CDX80016 AT2G46410.1 14627722
AT1G63650.1 CDX83366 AT2G46410.1 14627722
AT1G63650.1 CDX95700 AT2G46410.1 14627722
AT1G63650.1 CDY42045 AT2G46410.1 14627722
AT1G63650.1 CDX80016 AT2G46410.1 15361138
AT1G63650.1 CDX83366 AT2G46410.1 15361138
AT1G63650.1 CDX95700 AT2G46410.1 15361138
AT1G63650.1 CDY42045 AT2G46410.1 15361138
AT1G63650.1 CDX80085 AT2G47190.1 12056412
AT1G63650.1 CDX95420 AT2G47190.1 12056412
AT1G63650.1 CDY27504 AT2G47190.1 12056412
AT1G63650.1 CDY07085 AT3G13540.1 15361138
AT1G63650.1 CDY23616 AT3G13540.1 15361138
AT1G63650.1 CDY24177 AT3G13540.1 15361138
AT1G63650.1 CDY59254 AT3G13540.1 15361138
AT1G63650.1 CDX86461 AT3G27920.1 12917293
AT1G63650.1 CDX86461 AT3G27920.1 15361138
AT1G63650.1 CDX69561 AT5G14750.1 14627722
AT1G63650.1 CDX85583 AT5G14750.1 14627722
AT1G63650.1 CDX91023 AT5G14750.1 14627722
AT1G63650.1 CDY09882 AT5G14750.1 14627722
AT1G63650.1 CDX69561 AT5G14750.1 15361138
AT1G63650.1 CDX85583 AT5G14750.1 15361138
AT1G63650.1 CDX91023 AT5G14750.1 15361138
AT1G63650.1 CDY09882 AT5G14750.1 15361138
AT1G63650.1 CDX69561 AT5G14750.1 17644729
AT1G63650.1 CDX85583 AT5G14750.1 17644729
AT1G63650.1 CDX91023 AT5G14750.1 17644729
AT1G63650.1 CDY09882 AT5G14750.1 17644729
AT1G63650.1 CDX80449 AT5G24520.1 12917293
AT1G63650.1 CDY05440 AT5G24520.1 12917293
AT1G63650.1 CDY44571 AT5G40330.1 15361138
AT1G63650.1 CDY19687 AT5G53200.1 12917293
AT1G63650.1 CDY19688 AT5G53200.1 12917293
AT1G63650.1 CDY38733 AT5G53200.1 12917293
AT1G63650.1 CDY47058 AT5G53200.1 12917293
AT1G63650.1 CDY58661 AT5G53200.1 12917293
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45357 Canola cytosol, golgi, nucleus 30.74 97.89
CDY72121 Canola nucleus 49.59 97.4
CDY34367 Canola nucleus 87.11 88.42
CDY25513 Canola nucleus 83.97 88.04
AT1G63650.1 Thale cress nucleus 86.12 87.42
CDY39747 Canola nucleus 64.46 69.77
CDY58950 Canola nucleus 64.46 67.59
VIT_02s0025g03450.t01 Wine grape nucleus 49.75 47.93
GSMUA_Achr11P... Banana nucleus 36.69 47.13
Solyc08g081140.2.1 Tomato nucleus 43.97 42.49
GSMUA_Achr8P11430_001 Banana nucleus 38.02 42.12
GSMUA_Achr11P... Banana nucleus 36.53 40.04
GSMUA_Achr11P... Banana nucleus 39.17 39.97
GSMUA_Achr5P20600_001 Banana nucleus 35.37 36.39
PGSC0003DMT400032140 Potato nucleus 21.16 35.56
CDY70506 Canola nucleus 31.07 35.21
CDY51155 Canola mitochondrion, nucleus 31.41 35.06
CDY07214 Canola mitochondrion, nucleus 31.24 34.87
CDX91907 Canola nucleus 30.91 34.38
CDX86891 Canola nucleus 26.28 30.52
CDX99505 Canola nucleus 26.12 30.33
CDX77694 Canola nucleus 10.41 24.9
CDY27319 Canola nucleus 17.19 23.48
CDX77696 Canola nucleus 4.63 23.33
CDY58502 Canola nucleus 16.86 22.72
CDX77688 Canola nucleus 16.86 22.57
CDY66312 Canola nucleus 16.86 22.27
CDY70012 Canola nucleus 9.75 22.1
CDX80023 Canola nucleus 17.69 21.97
CDY56874 Canola nucleus 17.69 21.79
CDY34468 Canola nucleus 16.03 21.51
CDY32242 Canola nucleus 15.7 21.06
CDY03185 Canola nucleus 16.2 20.72
CDX90525 Canola nucleus 15.21 20.18
CDY59973 Canola nucleus 16.86 20.04
CDX90021 Canola nucleus 17.69 19.81
CDY03183 Canola nucleus 16.53 19.65
CDY03195 Canola nucleus 17.69 19.63
CDY35183 Canola nucleus 16.2 19.33
CDY26910 Canola nucleus 14.05 19.19
CDX73261 Canola nucleus 14.05 19.19
CDY70013 Canola nucleus 7.93 19.05
CDY35179 Canola nucleus 17.69 19.04
CDX77699 Canola nucleus 8.26 18.45
CDX89627 Canola nucleus 7.93 17.98
CDX93135 Canola nucleus 7.93 17.98
CDY09695 Canola nucleus 14.38 17.86
CDX78808 Canola nucleus 17.02 17.79
CDY44507 Canola nucleus 17.19 17.75
CDY33482 Canola nucleus 7.93 17.71
CDY13737 Canola nucleus 8.26 16.95
CDX89512 Canola nucleus 8.26 16.89
CDX84081 Canola nucleus 14.71 16.82
CDX76899 Canola nucleus 8.76 16.41
CDY25629 Canola nucleus 8.1 16.33
CDX75679 Canola nucleus 8.93 16.07
CDY13735 Canola nucleus 7.6 15.92
CDX89511 Canola nucleus 8.43 15.89
CDY72199 Canola nucleus 8.76 15.87
CDY49678 Canola nucleus 8.76 15.87
CDX69336 Canola nucleus 8.76 15.68
CDY25628 Canola nucleus 8.26 15.53
CDY52593 Canola nucleus 7.27 15.44
CDX89513 Canola nucleus 7.44 13.85
CDY52591 Canola nucleus 7.11 13.65
CDY25630 Canola nucleus 7.27 13.54
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078F5I3UniProt:A0A078F5I3EnsemblPlants:CDY08314ProteinID:CDY08314
ProteinID:CDY08314.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00000001001InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:MYC/MYB_NPFAM:PF00010
PFAM:PF14215PFscan:PS50888PANTHER:PTHR11514PANTHER:PTHR11514:SF38SMART:SM00353SUPFAM:SSF47459
UniParc:UPI0004EF4A93InterPro:bHLH_dom::::
Description
BnaC09g12820DBnaC09g12820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5I3]
Coordinates
chrLK031985:+:4090..8763
Molecular Weight (calculated)
67726.8 Da
IEP (calculated)
4.974
GRAVY (calculated)
-0.426
Length
605 amino acids
Sequence
(BLAST)
001: MATGENRTVQ ENLKKHLAVS VRNIQWSYGI FWSISASQPG VLEWGDGYYN GDIKTRKTIQ AVEVKADQLG LERSDQLREL YESLSVAESS ASGGSQVSRR
101: ASATALSPED LTDTEWYYLV CMSFVFNIGE GITGGALGNG EPIWLCNAHT ADSKVFTRSL LAKSASLLTV VCFPFLGGVL EIGTTEHITE DFNVIQCVKT
201: LFLEAHPYGT ISTRSDYQEI FDPLNSDKYI PTFGTEAFPT TSTSVFEQEL EDHDSFINGG GASQVQSWQF VGEELNNCVH QPVNSSDCVS QTFVGGTTGR
301: VSCNPRKSRP QRLGQIQEQS NRLNMDDDVH YQGVISTIFK TTHQLVLGPQ FQNFDKRSSF TRWRRLPLSA KTLGEKSQNM LKKIVFEVPR MHQKELLLPD
401: TPEDNMFKVG DETGNHALSE RKCREKLNDR FMTLRSIIPS ISKIDKVSIL DDTIDYLQEL QRRVQELESC REYTDTEMQM PMKRKKPEDE DERASANCLN
501: TKRKESDVNV GEDEPADTGY AGLTDNLRIG SFGNEVVIEL RCAWREGILL EIMDVISHLN LDSHSVQSST GDGLLCLTVN CKHKGTNIAT AGMIQEALQR
601: VAWIC
Best Arabidopsis Sequence Match ( AT1G63650.3 )
(BLAST)
001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC
Arabidopsis Description
BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.