Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72006 | Canola | nucleus | 64.85 | 88.57 |
| CDY72660 | Canola | nucleus | 47.7 | 87.02 |
| AT1G66380.1 | Thale cress | nucleus | 50.21 | 86.33 |
| CDX96151 | Canola | nucleus | 84.1 | 81.38 |
| CDY70737 | Canola | nucleus | 77.41 | 81.14 |
| CDY55040 | Canola | nucleus | 76.15 | 73.09 |
| CDY58386 | Canola | nucleus, plastid | 76.15 | 73.09 |
| AT1G66390.1 | Thale cress | nucleus | 72.38 | 69.48 |
| AT1G56650.1 | Thale cress | nucleus | 70.71 | 68.15 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 23.85 | 60.64 |
| AT1G66370.1 | Thale cress | nucleus | 62.34 | 60.57 |
| CDY53214 | Canola | nucleus | 69.87 | 60.29 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 39.33 | 59.49 |
| KRH01212 | Soybean | nucleus | 38.08 | 48.15 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 46.44 | 45.68 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 40.59 | 43.3 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 43.93 | 43.21 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 39.75 | 42.41 |
| KRH40047 | Soybean | nucleus | 41.84 | 42.37 |
| KRH01217 | Soybean | nucleus | 40.17 | 41.56 |
| KRH40053 | Soybean | nucleus | 40.59 | 41.28 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 42.26 | 40.4 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 33.47 | 40.2 |
| KRH40049 | Soybean | nucleus | 39.75 | 40.08 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 43.1 | 38.87 |
| Solyc10g086260.1.1 | Tomato | nucleus | 44.35 | 38.69 |
| Solyc10g086270.1.1 | Tomato | nucleus | 41.42 | 38.22 |
| Solyc10g086250.1.1 | Tomato | nucleus | 43.93 | 38.18 |
| Solyc10g086290.1.1 | Tomato | nucleus | 42.26 | 38.11 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 38.08 | 38.08 |
| KRG93566 | Soybean | nucleus | 39.75 | 37.55 |
| PGSC0003DMT400036281 | Potato | extracellular | 20.92 | 24.04 |
| PGSC0003DMT400036284 | Potato | nucleus | 19.67 | 22.17 |
| KRH21221 | Soybean | nucleus | 21.34 | 21.7 |
| KRH40048 | Soybean | cytosol | 6.28 | 14.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IFF6 | UniProt:A0A078IFF6 | EnsemblPlants:CDY49630 | ProteinID:CDY49630 |
| ProteinID:CDY49630.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00093494001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF526 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE5CEB | SEG:seg |
Description
BnaCnng17820DBnaCnng17820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFF6]
Coordinates
chrLK032849:-:28814..30401
Molecular Weight (calculated)
27013.2 Da
IEP (calculated)
9.361
GRAVY (calculated)
-0.684
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSKRLRK GAYIAEEDNL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS INRGKFNSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPGCKTQM KKRNIPCSST TPAQKIDVFK PRPRSFTVNN GCSHINSMPE AEFVPLCLGF NDANNVGENS FTCNKDDDKS ELVSNLVDGQ
201: NMWWESLLDE SQDPAALCPE ATATKKGATS ALNIFKSCL
101: KNYWNTHLSK KHEPGCKTQM KKRNIPCSST TPAQKIDVFK PRPRSFTVNN GCSHINSMPE AEFVPLCLGF NDANNVGENS FTCNKDDDKS ELVSNLVDGQ
201: NMWWESLLDE SQDPAALCPE ATATKKGATS ALNIFKSCL
001: MEGSSKGLRK GAWTAEEDSL LRLCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGRLSNDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD
Arabidopsis Description
MYB90Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.