Factsheet for VIT_02s0033g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00400.t01	Wine grape	nucleus	95.54	95.54
VIT_02s0033g00460.t01	Wine grape	mitochondrion	79.91	89.95
VIT_02s0033g00370.t01	Wine grape	nucleus	29.46	70.21
CDY72660	Canola	nucleus	37.95	64.89
VIT_02s0033g00450.t01	Wine grape	nucleus	44.64	63.29
AT1G66380.1	Thale cress	nucleus	38.39	61.87
VIT_02s0033g00410.t01	Wine grape	nucleus	59.38	53.2
CDY72006	Canola	nucleus	39.29	50.29
KRH01212	Soybean	nucleus	41.52	49.21
VIT_14s0006g01280.t01	Wine grape	nucleus	49.11	45.27
VIT_02s0033g00390.t01	Wine grape	nucleus	52.68	44.53
KRH01217	Soybean	nucleus	44.2	42.86
VIT_14s0006g01290.t01	Wine grape	nucleus	45.98	42.39
KRH40049	Soybean	nucleus	44.64	42.19
CDY70737	Canola	nucleus	42.86	42.11
KRH40047	Soybean	nucleus	43.75	41.53
KRH40053	Soybean	nucleus	42.41	40.43
Bra001917.1-P	Field mustard	nucleus	44.64	40.16
AT1G66370.1	Thale cress	nucleus	43.75	39.84
CDY49630	Canola	nucleus	42.41	39.75
CDX96151	Canola	nucleus	43.75	39.68
CDY55040	Canola	nucleus	43.75	39.36
CDY58386	Canola	nucleus, plastid	43.75	39.36
Bra004162.1-P	Field mustard	nucleus	43.3	39.27
Bra039763.1-P	Field mustard	nucleus	43.3	38.96
AT1G66390.1	Thale cress	nucleus	43.3	38.96
Solyc10g086270.1.1	Tomato	nucleus	44.2	38.22
Solyc10g086290.1.1	Tomato	nucleus	44.64	37.74
AT1G56650.1	Thale cress	nucleus	41.52	37.5
VIT_14s0006g01340.t01	Wine grape	nucleus	39.29	36.82
KRG93566	Soybean	nucleus	41.52	36.76
Solyc10g086260.1.1	Tomato	nucleus	43.75	35.77
Solyc10g086250.1.1	Tomato	nucleus	43.75	35.64
CDY53214	Canola	nucleus	42.41	34.3
VIT_01s0011g01200.t01	Wine grape	nucleus	31.7	34.13
VIT_01s0011g01190.t01	Wine grape	nucleus	33.48	33.94
PGSC0003DMT400036281	Potato	extracellular	21.43	23.08
PGSC0003DMT400036284	Potato	nucleus	19.2	20.28
KRH21221	Soybean	nucleus	20.09	19.15
KRH40048	Soybean	cytosol	6.7	14.42

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244722	wikigene:100244722	EntrezGene:100249851	wikigene:100249851	MapMan:15.5.2.1
ProteinID:CBI37398	ProteinID:CBI37398.3	UniProt:D7U3S9	EMBL:FN596505	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100244722	wikigene:LOC100244722	EntrezGene:LOC100249851	wikigene:LOC100249851
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF952	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001982D1D	ArrayExpress:VIT_02s0033g00430	EnsemblPlantsGene:VIT_02s0033g00430	EnsemblPlants:VIT_02s0033g00430.t01
RefSeq:XP_002265163	RefSeq:XP_002265163.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:14280776..14281843

Molecular Weight (calculated)

25738.9 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.539

Length

224 amino acids

Sequence
(BLAST)

001: MESLGVTKGK WTREEDILLR KCVENYGEEK WHLVPLRAGL SRCRKSCRLR WFNYLKPNIK RGKFASDEVD LMIRLHKLLG NRWSLIAGRL PGRTANDVKN
101: YWHHHRFKKM VPIQEKGKDK AQTNSENTLI KPKPCKLFLG FTFKTTAVDA SETQGSTCSE LQPTLVQPNQ DILWWESLFA DHTIEDQELI ASLLADETAS
201: AVDTNGGGNF DFPFEMGLID EVMR

Best Arabidopsis Sequence Match ( AT1G56650.1 )
(BLAST)

001: MEGSSKGLRK GAWTTEEDSL LRQCINKYGE GKWHQVPVRA GLNRCRKSCR LRWLNYLKPS IKRGKLSSDE VDLLLRLHRL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD

Arabidopsis Description

MYB75Transcription factor MYB75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.