Factsheet for VIT_02s0033g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00370.t01	Wine grape	nucleus	44.94	75.53
CDY72660	Canola	nucleus	55.7	67.18
AT1G66380.1	Thale cress	nucleus	58.23	66.19
CDY72006	Canola	nucleus	58.23	52.57
VIT_02s0033g00390.t01	Wine grape	nucleus	82.28	49.06
VIT_02s0033g00410.t01	Wine grape	nucleus	73.42	46.4
VIT_02s0033g00400.t01	Wine grape	nucleus	64.56	45.54
KRH01212	Soybean	nucleus	54.43	45.5
VIT_02s0033g00430.t01	Wine grape	nucleus	63.29	44.64
CDY70737	Canola	nucleus	61.39	42.54
VIT_02s0033g00460.t01	Wine grape	mitochondrion	52.53	41.71
VIT_14s0006g01280.t01	Wine grape	nucleus	62.03	40.33
VIT_14s0006g01290.t01	Wine grape	nucleus	60.76	39.51
CDY49630	Canola	nucleus	59.49	39.33
AT1G66390.1	Thale cress	nucleus	61.39	38.96
CDX96151	Canola	nucleus	60.76	38.87
AT1G66370.1	Thale cress	nucleus	60.13	38.62
KRH01217	Soybean	nucleus	56.33	38.53
Bra004162.1-P	Field mustard	nucleus	60.13	38.46
AT1G56650.1	Thale cress	nucleus	60.13	38.31
CDY55040	Canola	nucleus	60.13	38.15
Bra039763.1-P	Field mustard	nucleus	60.13	38.15
KRH40047	Soybean	nucleus	56.96	38.14
CDY58386	Canola	nucleus, plastid	59.49	37.75
Bra001917.1-P	Field mustard	nucleus	59.49	37.75
KRH40053	Soybean	nucleus	55.7	37.45
VIT_14s0006g01340.t01	Wine grape	nucleus	56.33	37.24
KRH40049	Soybean	nucleus	54.43	36.29
Solyc10g086270.1.1	Tomato	nucleus	58.86	35.91
KRG93566	Soybean	nucleus	56.33	35.18
Solyc10g086290.1.1	Tomato	nucleus	58.86	35.09
VIT_01s0011g01200.t01	Wine grape	nucleus	45.57	34.62
Solyc10g086260.1.1	Tomato	nucleus	59.49	34.31
Solyc10g086250.1.1	Tomato	nucleus	59.49	34.18
CDY53214	Canola	nucleus	57.59	32.85
VIT_01s0011g01190.t01	Wine grape	nucleus	44.94	32.13
PGSC0003DMT400036281	Potato	extracellular	27.22	20.67
KRH21221	Soybean	nucleus	24.68	16.6
PGSC0003DMT400036284	Potato	nucleus	20.89	15.57
KRH40048	Soybean	cytosol	3.8	5.77

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100853472	wikigene:100853472	MapMan:15.5.2.1	EMBL:AB097925	EMBL:AB442011
ProteinID:ABB87015	ProteinID:ABB87015.1	ProteinID:ABB87016	ProteinID:ABB87016.1	ProteinID:ABB87017	ProteinID:ABB87017.1
ProteinID:ABC54958	ProteinID:ABC54958.1	ProteinID:ABC54963	ProteinID:ABC54963.1	ProteinID:ABC54964	ProteinID:ABC54964.1
ProteinID:ABL14067	ProteinID:ABL14067.1	ProteinID:ABL14068	ProteinID:ABL14068.1	ProteinID:ACN53919	ProteinID:ACN53919.1
ProteinID:ACN53920	ProteinID:ACN53920.1	ProteinID:ACN53921	ProteinID:ACN53921.1	ProteinID:ACN53924	ProteinID:ACN53924.1
ProteinID:ACN53930	ProteinID:ACN53930.1	ProteinID:ACN53943	ProteinID:ACN53943.1	ProteinID:ACN53944	ProteinID:ACN53944.1
ProteinID:BAD18979	ProteinID:BAD18979.1	ProteinID:BAH15079	ProteinID:BAH15079.1	ProteinID:CBI37400	ProteinID:CBI37400.3
EMBL:DQ277650	EMBL:DQ277656	EMBL:DQ277657	EMBL:DQ277697	EMBL:DQ277698	EMBL:DQ277699
EMBL:DQ886421	EMBL:DQ886422	EMBL:FJ687556	EMBL:FJ687557	EMBL:FJ687558	EMBL:FJ687561
EMBL:FJ687567	EMBL:FJ687580	EMBL:FJ687581	EMBL:FN596505	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100853472	wikigene:LOC100853472	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF952	UniProt:Q6L9M7	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC64719	UniParc:UPI00003679D9	ArrayExpress:VIT_02s0033g00450	EnsemblPlantsGene:VIT_02s0033g00450	EnsemblPlants:VIT_02s0033g00450.t01

Description

Myb-related transcription factor [Source:UniProtKB/TrEMBL;Acc:Q6L9M7]

Coordinates

chr2:-:14308526..14309284

Molecular Weight (calculated)

18536.4 Da

IEP (calculated)

10.871

GRAVY (calculated)

-1.035

Length

158 amino acids

Sequence
(BLAST)

001: MESLGVRKGA WTQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCRKSCRLR WLNYLKPDIK RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN
101: YWHGHHLKKK VQFQEEGRDK PQTHSKTKAI KSRKPLDRRN CNTDKGTHGW YGRTNPGR

Best Arabidopsis Sequence Match ( AT1G66390.1 )
(BLAST)

001: MEGSSKGLRK GAWTAEEDSL LRLCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGRLSNDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD

Arabidopsis Description

MYB90Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.