Factsheet for VIT_07s0104g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0033g00370.t01
VIT_02s0033g00390.t01
VIT_02s0033g00400.t01
VIT_02s0033g00410.t01
VIT_02s0033g00430.t01
VIT_02s0033g00450.t01
VIT_02s0033g00460.t01
VIT_04s0023g03710.t01
VIT_06s0004g00570.t01
VIT_07s0005g01950.t01
VIT_07s0104g00090.t01
VIT_08s0007g07230.t01
VIT_14s0006g01280.t01
VIT_14s0006g01290.t01
VIT_14s0006g01340.t01
VIT_16s0098g00870.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	VIT_02s0033g00370.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00390.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00400.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00410.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00430.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00450.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00460.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_14s0006g01280.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_14s0006g01290.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_14s0006g01340.t01	AT1G56650.1	15361138
AT4G09820.1	VIT_02s0033g00370.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00390.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00400.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00410.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00430.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00450.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00460.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_14s0006g01280.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_14s0006g01290.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_14s0006g01340.t01	AT1G56650.1	18532977
AT4G09820.1	VIT_02s0033g00370.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00390.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00400.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00410.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00430.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00450.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00460.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_14s0006g01280.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_14s0006g01290.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_14s0006g01340.t01	AT1G66370.1	15361138
AT4G09820.1	VIT_02s0033g00370.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00390.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00400.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00410.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00430.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00450.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00460.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_14s0006g01280.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_14s0006g01290.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_14s0006g01340.t01	AT1G66380.1	15361138
AT4G09820.1	VIT_02s0033g00370.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_02s0033g00390.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_02s0033g00400.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_02s0033g00410.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_02s0033g00430.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_02s0033g00450.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_02s0033g00460.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_14s0006g01280.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_14s0006g01290.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_14s0006g01340.t01	AT1G66390.1	15361138
AT4G09820.1	VIT_07s0005g01950.t01	AT2G47190.1	18532977
AT4G09820.1	VIT_06s0004g00570.t01	AT3G13540.1	15361138
AT4G09820.1	VIT_08s0007g07230.t01	AT3G13540.1	15361138
AT4G09820.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT4G09820.1	VIT_04s0023g03710.t01	AT4G38620.1	15361138
AT4G09820.1	VIT_16s0098g00870.t01	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71432	Soybean	nucleus	66.09	70.44
KRH32008	Soybean	extracellular, plastid	66.24	69.43
GSMUA_Achr3P17620_001	Banana	nucleus	49.28	60.82
Solyc09g065100.1.1	Tomato	nucleus	58.76	60.15
PGSC0003DMT400033569	Potato	nucleus	50.86	60.0
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	48.85	59.44
AT4G09820.1	Thale cress	nucleus	43.68	58.69
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	49.57	58.67
CDX86891	Canola	nucleus	41.52	55.47
CDX99505	Canola	nucleus	41.24	55.09
Bra037887.1-P	Field mustard	nucleus	39.08	54.73
GSMUA_Achr6P21490_001	Banana	nucleus	51.01	54.53
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	41.09	45.69
TraesCS1B01G112900.1	Wheat	nucleus	39.08	43.11
TraesCS1B01G113100.4	Wheat	nucleus	41.38	41.86
Zm00001d019170_P001	Maize	nucleus	39.66	40.95
OQU88697	Sorghum	nucleus	39.8	40.92
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	29.02	39.69
TraesCS1D01G094200.1	Wheat	nucleus	33.19	36.61
VIT_02s0025g03450.t01	Wine grape	nucleus	31.03	34.39
VIT_15s0046g02560.t01	Wine grape	nucleus	32.18	33.99
PGSC0003DMT400028054	Potato	cytosol	7.47	26.4
VIT_15s0048g02820.t01	Wine grape	nucleus	18.68	26.16
VIT_02s0025g02610.t01	Wine grape	nucleus	13.36	25.76
PGSC0003DMT400028052	Potato	nucleus	7.47	25.62
VIT_00s0824g00020.t01	Wine grape	nucleus	6.03	24.56
VIT_07s0205g00160.t01	Wine grape	nucleus	6.32	23.66
VIT_07s0141g01060.t01	Wine grape	nucleus	15.37	21.79
VIT_02s0012g01320.t01	Wine grape	nucleus	20.69	21.72
VIT_15s0046g00320.t01	Wine grape	nucleus	18.1	20.86
VIT_00s0927g00010.t01	Wine grape	nucleus	6.61	20.18
VIT_03s0088g01240.t01	Wine grape	nucleus	9.77	19.77
VIT_07s0205g00190.t01	Wine grape	nucleus	8.91	18.34
VIT_07s0205g00180.t01	Wine grape	nucleus	8.62	17.14
VIT_00s1314g00010.t01	Wine grape	nucleus	8.05	16.77
VIT_00s0384g00020.t01	Wine grape	nucleus	4.6	16.24
VIT_07s0205g00170.t01	Wine grape	cytosol	2.44	13.49

Protein Annotations

EntrezGene:100251098	wikigene:100251098	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ACC68685	ProteinID:ACC68685.1
ProteinID:CCB56838	ProteinID:CCB56838.1	ncoils:Coil	EMBL:EU447172	UniProt:F6HQ81	EMBL:FN596005
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	InterPro:MYC/MYB_N	EntrezGene:MYC1	wikigene:MYC1	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00019838A0
ArrayExpress:VIT_07s0104g00090	EnsemblPlantsGene:VIT_07s0104g00090	EnsemblPlants:VIT_07s0104g00090.t01	unigene:Vvi.21828	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr7:-:1386914..1392650

Molecular Weight (calculated)

77535.6 Da

IEP (calculated)

5.803

GRAVY (calculated)

-0.671

Length

696 amino acids

Sequence
(BLAST)

001: MAAPPNSRLQ SMLQSAVQSV RWTYSLFWQI CPQQGILVWG DGYYNGAIKT RKTVQPMEVS AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL
101: TESEWFYLMC VSFSFPPGVG LPGKAYAKRH HIWLAGANEV DSKVFSRAIL AKSARVQTVV CIPLMDGVVE FGTTEKVQED LGFVQHVKSF FTDHQLHNHP
201: PKPALSEHST SNPATSSDHS RFHSPPIQAA YAAADPPASN NQEEEEEEEE EEEEEEEEEE EAESDSEAET GRNNRRVRTQ NTGTEGVAGS HTAAEPSELI
301: QLEMSEGIRL GSPDDGSNNL DSDFHMLAVS QPGSSVDHQR RADSYRAESA RRWPMLQDPL CSSGLQQPPP QPPTGPPPLD ELSHEDTHYS QTVSTILQHQ
401: PNRWSESSSS GCIAPYSSQS AFAKWTTRCD HHHHPMAVEG TSQWLLKYIL FSVPFLHTKY RDENSPKSRD GDSAGRFRKG TPQDELSANH VLAERRRREK
501: LNERFIILRS LVPFVTKMDK ASILGDTIEY VKQLRKKIQD LEARTRQMEV EQRSRGSDSV RSKEHRIGSG GVDRNRAVVA GSDKRKLRIV EGSTGAKPKV
601: VDSPPAAVEG GTTTVEVSII ESDALLEMQC PYREGLLLDV MQMLRDLRLE TTTVQSSLTN GVFVAELRAK VKENASGKKA SIMEVKRAIN QIIPQC

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.