CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93566
KRG95511
KRG96561
KRH01212
KRH01217
KRH16413
KRH17997
KRH21221
KRH24301
KRH29280
KRH31760
KRH32008
KRH40047
KRH40048
KRH40049
KRH40053
KRH51400
KRH53635
KRH60702
KRH64293
KRH67189
KRH68299
KRH69178
KRH71432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	KRG93566	AT1G56650.1	15361138
AT4G09820.1	KRH01212	AT1G56650.1	15361138
AT4G09820.1	KRH01217	AT1G56650.1	15361138
AT4G09820.1	KRH21221	AT1G56650.1	15361138
AT4G09820.1	KRH40047	AT1G56650.1	15361138
AT4G09820.1	KRH40048	AT1G56650.1	15361138
AT4G09820.1	KRH40049	AT1G56650.1	15361138
AT4G09820.1	KRH40053	AT1G56650.1	15361138
AT4G09820.1	KRG93566	AT1G56650.1	18532977
AT4G09820.1	KRH01212	AT1G56650.1	18532977
AT4G09820.1	KRH01217	AT1G56650.1	18532977
AT4G09820.1	KRH21221	AT1G56650.1	18532977
AT4G09820.1	KRH40047	AT1G56650.1	18532977
AT4G09820.1	KRH40048	AT1G56650.1	18532977
AT4G09820.1	KRH40049	AT1G56650.1	18532977
AT4G09820.1	KRH40053	AT1G56650.1	18532977
AT4G09820.1	KRG93566	AT1G66370.1	15361138
AT4G09820.1	KRH01212	AT1G66370.1	15361138
AT4G09820.1	KRH01217	AT1G66370.1	15361138
AT4G09820.1	KRH21221	AT1G66370.1	15361138
AT4G09820.1	KRH40047	AT1G66370.1	15361138
AT4G09820.1	KRH40048	AT1G66370.1	15361138
AT4G09820.1	KRH40049	AT1G66370.1	15361138
AT4G09820.1	KRH40053	AT1G66370.1	15361138
AT4G09820.1	KRG93566	AT1G66380.1	15361138
AT4G09820.1	KRH01212	AT1G66380.1	15361138
AT4G09820.1	KRH01217	AT1G66380.1	15361138
AT4G09820.1	KRH21221	AT1G66380.1	15361138
AT4G09820.1	KRH40047	AT1G66380.1	15361138
AT4G09820.1	KRH40048	AT1G66380.1	15361138
AT4G09820.1	KRH40049	AT1G66380.1	15361138
AT4G09820.1	KRH40053	AT1G66380.1	15361138
AT4G09820.1	KRG93566	AT1G66390.1	15361138
AT4G09820.1	KRH01212	AT1G66390.1	15361138
AT4G09820.1	KRH01217	AT1G66390.1	15361138
AT4G09820.1	KRH21221	AT1G66390.1	15361138
AT4G09820.1	KRH40047	AT1G66390.1	15361138
AT4G09820.1	KRH40048	AT1G66390.1	15361138
AT4G09820.1	KRH40049	AT1G66390.1	15361138
AT4G09820.1	KRH40053	AT1G66390.1	15361138
AT4G09820.1	KRG96561	AT2G47190.1	18532977
AT4G09820.1	KRH31760	AT2G47190.1	18532977
AT4G09820.1	KRH68299	AT2G47190.1	18532977
AT4G09820.1	KRH69178	AT2G47190.1	18532977
AT4G09820.1	KRH16413	AT3G13540.1	15361138
AT4G09820.1	KRH17997	AT3G13540.1	15361138
AT4G09820.1	KRG95511	AT4G09820.1	18532977
AT4G09820.1	KRH32008	AT4G09820.1	18532977
AT4G09820.1	KRH67189	AT4G09820.1	18532977
AT4G09820.1	KRH71432	AT4G09820.1	18532977
AT4G09820.1	KRH24301	AT4G38620.1	15361138
AT4G09820.1	KRH29280	AT4G38620.1	15361138
AT4G09820.1	KRH51400	AT4G38620.1	15361138
AT4G09820.1	KRH60702	AT4G38620.1	15361138
AT4G09820.1	KRH53635	AT5G24520.1	15255866
AT4G09820.1	KRH64293	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	81.8	84.09
KRH71432	Soybean	nucleus	60.2	54.21
KRH32008	Soybean	extracellular, plastid	60.71	53.77
AT4G09820.1	Thale cress	nucleus	43.88	49.81
VIT_07s0104g00090.t01	Wine grape	nucleus	58.67	49.57
GSMUA_Achr3P17620_001	Banana	nucleus	46.94	48.94
CDX86891	Canola	nucleus	41.5	46.83
CDX99505	Canola	nucleus	41.33	46.64
Bra037887.1-P	Field mustard	nucleus	37.93	44.87
Solyc09g065100.1.1	Tomato	nucleus	51.53	44.56
PGSC0003DMT400033569	Potato	nucleus	44.22	44.07
GSMUA_Achr6P21490_001	Banana	nucleus	47.79	43.16
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	39.12	36.74
TraesCS1B01G112900.1	Wheat	nucleus	38.44	35.82
TraesCS1B01G113100.4	Wheat	nucleus	39.97	34.16
Zm00001d019170_P001	Maize	nucleus	36.56	31.9
OQU88697	Sorghum	nucleus	36.39	31.61
KRH41187	Soybean	nucleus	32.31	30.16
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	25.68	29.67
TraesCS1D01G094200.1	Wheat	nucleus	31.46	29.32
KRH59908	Soybean	nucleus	31.29	29.16
KRH48144	Soybean	nucleus	30.44	27.54
PGSC0003DMT400028054	Potato	cytosol	9.01	26.9
KRH65046	Soybean	nucleus	29.59	26.89
PGSC0003DMT400028052	Potato	nucleus	9.01	26.11
KRH47834	Soybean	nucleus	19.05	24.14
KRH42021	Soybean	nucleus	7.99	24.1
KRH06400	Soybean	nucleus	18.54	23.39
KRH05127	Soybean	nucleus, plastid	11.22	22.53
KRH68922	Soybean	nucleus	19.22	20.55
KRH32144	Soybean	nucleus	17.52	20.44
KRH19522	Soybean	nucleus	17.18	19.96
KRH23623	Soybean	nucleus	7.14	19.27
KRH28295	Soybean	nucleus	10.03	18.85
KRH75613	Soybean	nucleus	20.41	18.84
KRH74418	Soybean	nucleus	20.41	18.69
KRH49880	Soybean	nucleus	10.37	18.54
KRH77195	Soybean	nucleus	11.56	18.48
KRG97199	Soybean	nucleus	19.39	18.42
KRH28296	Soybean	nucleus	10.88	18.34
KRH09683	Soybean	nucleus	8.16	18.32
KRH06456	Soybean	nucleus	19.22	18.28
KRH45440	Soybean	nucleus	19.73	17.74
KRH47401	Soybean	nucleus	6.12	17.73
KRH04348	Soybean	nucleus	11.22	17.69
KRH47899	Soybean	nucleus	18.2	17.09
KRH77192	Soybean	nucleus	9.86	17.01
KRH58186	Soybean	nucleus	10.37	16.9
KRH39540	Soybean	nucleus	20.92	16.83
KRH58189	Soybean	nucleus	10.88	16.75
KRH00980	Soybean	nucleus	5.78	16.75
KRH04346	Soybean	nucleus	10.54	16.71
KRH23624	Soybean	nucleus	7.99	16.55
KRH44509	Soybean	nucleus	5.95	16.43
KRH44511	Soybean	nucleus	9.01	16.16
KRH47399	Soybean	nucleus	9.35	16.13
KRH40248	Soybean	cytosol	3.91	15.97
KRH23621	Soybean	nucleus	7.82	15.81
KRH09685	Soybean	cytosol	7.82	15.54
KRH48860	Soybean	nucleus	8.33	15.51
KRH10664	Soybean	nucleus	9.69	15.45
KRH66425	Soybean	nucleus	8.16	15.38
KRH66407	Soybean	nucleus	10.2	15.38
KRH44510	Soybean	nucleus	7.14	15.27
KRH40246	Soybean	nucleus, vacuole	6.97	15.19
KRH77193	Soybean	nucleus	8.33	14.94
KRH47400	Soybean	nucleus	6.8	14.87
KRH48847	Soybean	nucleus	9.52	14.7
KRH04347	Soybean	nucleus	8.5	14.66
KRH21680	Soybean	nucleus, vacuole	9.35	14.63
KRH58187	Soybean	endoplasmic reticulum	8.33	14.58
KRH44512	Soybean	nucleus	9.18	14.4
KRH48858	Soybean	nucleus	7.82	14.29
KRH00979	Soybean	nucleus	7.14	13.82
KRH47398	Soybean	nucleus	8.67	13.78
KRH00981	Soybean	nucleus	7.48	13.54

Protein Annotations

EntrezGene:100780422	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02012113	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G155300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1N9G7
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRG95511	ProteinID:KRG95511	ProteinID:KRG95511.1	InterPro:MYC/MYB_N
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000233F14D	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:41556546..41564988

Molecular Weight (calculated)

66394.7 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.413

Length

588 amino acids

Sequence
(BLAST)

001: MATPPNSRLH TMLRASVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS TEEASLQRSE QLRELYESLS AEETINTQTR RPCAALSPED
101: LTESEWFYLL CVSFSFHLGI GLPGTAYARR QHLWLSGANE VDSKTFSRAI LAKSAHIQTV VCIPVLEGVV ELGTTDKIEE DLNFIQHIKS FFIDQQPPPP
201: TAKPALSEHS TSNLTSSYPL VIVPVTAAAT ANNVLIQNDM NIVDKGEAII LNNNNNNTEA ELLADPNSNS FIPSELMELD HQLEEFGVGS PGDGSNHLDS
301: FPKEESMALC AAGLELLQLQ RPPAPAHPPT ENLAQGDTDT HYSQTVSSIL KKNSSRWWPD SPSVNHPTDS FQSAFNKWKS DTDNHHHYFH ETVADGTSQG
401: LLKYILFNVP YLHANRLKGT GASSYETNHV MAERRRREKL NERFLILRSM VPFMMRMDKE SILEDTIHYI KQLREKIESL EARERLRGKR RVREVEVSII
501: ESEALLEVEC VHRERLLLDV MTMLRELGVE VMMVQSWVKD DGVFVAEMRA KVKENGNGKK ASVVEVKNAL NQIIPHHEPY TLCSNDHF

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.