Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47190.1 | KRG95511 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH32008 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH67189 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH71432 | AT4G09820.1 | 18532977 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68299 | Soybean | nucleus | 81.15 | 89.03 |
| KRH69178 | Soybean | nucleus | 67.31 | 67.31 |
| KRG94092 | Soybean | nucleus | 22.31 | 65.17 |
| KRH31760 | Soybean | nucleus | 64.23 | 59.22 |
| KRH55348 | Soybean | nucleus | 28.08 | 58.87 |
| KRH11843 | Soybean | nucleus | 27.69 | 58.06 |
| KRH62917 | Soybean | nucleus | 23.08 | 57.69 |
| KRH31759 | Soybean | nucleus | 52.31 | 57.63 |
| KRH33348 | Soybean | nucleus | 22.31 | 56.86 |
| KRH18107 | Soybean | nucleus | 26.54 | 54.76 |
| KRH75688 | Soybean | nucleus | 22.31 | 53.7 |
| KRH49797 | Soybean | nucleus | 28.46 | 51.03 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 50.77 | 48.53 |
| CDX95420 | Canola | nucleus | 42.31 | 47.41 |
| KRG96563 | Soybean | nucleus | 42.69 | 46.64 |
| KRH07188 | Soybean | nucleus | 37.31 | 46.63 |
| KRG94086 | Soybean | nucleus | 36.54 | 46.12 |
| KRH56587 | Soybean | nucleus | 36.15 | 45.63 |
| KRH68301 | Soybean | nucleus | 46.54 | 45.49 |
| KRG93265 | Soybean | nucleus | 35.77 | 45.37 |
| AT2G47190.1 | Thale cress | nucleus | 45.0 | 42.86 |
| CDY27504 | Canola | nucleus | 43.85 | 41.91 |
| Bra021389.1-P | Field mustard | nucleus | 43.85 | 41.91 |
| Bra004473.1-P | Field mustard | nucleus | 43.46 | 41.09 |
| CDX80085 | Canola | nucleus | 30.77 | 40.2 |
| KRH02414 | Soybean | nucleus | 47.69 | 38.51 |
| KRG97314 | Soybean | nucleus | 50.0 | 38.12 |
| KRH36928 | Soybean | nucleus | 49.62 | 37.94 |
| KRH50671 | Soybean | nucleus | 47.31 | 37.85 |
| KRH35934 | Soybean | nucleus | 41.15 | 34.74 |
| KRG90844 | Soybean | nucleus | 40.77 | 34.53 |
| KRG90311 | Soybean | nucleus | 33.08 | 33.08 |
| KRH04452 | Soybean | nucleus | 33.08 | 32.45 |
| KRG92245 | Soybean | nucleus | 31.54 | 32.28 |
| KRH34553 | Soybean | nucleus | 32.31 | 31.58 |
| KRH39173 | Soybean | nucleus | 36.92 | 30.97 |
| KRH48497 | Soybean | nucleus | 36.54 | 30.55 |
| KRH41648 | Soybean | nucleus | 36.54 | 30.45 |
| KRH60346 | Soybean | nucleus | 36.54 | 29.97 |
| KRH19953 | Soybean | nucleus | 26.15 | 29.69 |
| KRH32555 | Soybean | nucleus | 26.15 | 29.31 |
| KRH01379 | Soybean | nucleus | 28.85 | 29.07 |
| KRH10298 | Soybean | nucleus | 26.92 | 27.45 |
| KRH33568 | Soybean | nucleus | 33.46 | 27.19 |
| KRH24842 | Soybean | nucleus | 27.69 | 27.07 |
| KRH29850 | Soybean | nucleus | 27.31 | 26.69 |
| KRH23019 | Soybean | nucleus | 26.92 | 26.52 |
| KRH45095 | Soybean | nucleus | 27.31 | 25.82 |
| KRH01378 | Soybean | nucleus | 27.69 | 25.81 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 1.54 | 5.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EMBL:ACUP02012157 | EnsemblPlantsGene:GLYMA_19G218800 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:Homeobox-like_sf | UniProt:I1NBF1 | InterPro:IPR017930 | EnsemblPlants:KRG96561 | ProteinID:KRG96561 | ProteinID:KRG96561.1 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF494 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001D841A2 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr19:-:47122812..47125268
Molecular Weight (calculated)
29231.0 Da
IEP (calculated)
6.713
GRAVY (calculated)
-0.593
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSLSGSSE EEMSITKGPW TEEEDSVLFN YITVHGEGHW NSVARYTGLK RTGKSCRLRW LNYLRPNVRR GNITLEEQLL ILDLHSRWGN RWSKIAEHLP
101: GRTDNEIKNY WRTRVVKQAK QLKCEVNSKQ FRDTLRFVWM PRMLERIQAQ ASSSSSSSSG QAHQTTLISN AQAHSDPCGV MTTNPSLLSE VSSSALDAHA
201: PSLYDSSASY NLMGGGSSSS YSAEYCYYSD IAGNGFGGSD LWTDENICFL QQLLADHDLS
101: GRTDNEIKNY WRTRVVKQAK QLKCEVNSKQ FRDTLRFVWM PRMLERIQAQ ASSSSSSSSG QAHQTTLISN AQAHSDPCGV MTTNPSLLSE VSSSALDAHA
201: PSLYDSSASY NLMGGGSSSS YSAEYCYYSD IAGNGFGGSD LWTDENICFL QQLLADHDLS
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
Arabidopsis Description
ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.