Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027653.1-P | |
| Bra027796.1-P | |
| Bra037887.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47190.1 | Bra027653.1-P | AT1G63650.1 | 12056412 |
| AT2G47190.1 | Bra027796.1-P | AT1G63650.1 | 12056412 |
| AT2G47190.1 | Bra037887.1-P | AT4G09820.1 | 18532977 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95420 | Canola | nucleus | 76.36 | 90.52 |
| CDX80085 | Canola | nucleus | 65.45 | 90.45 |
| AT2G47190.1 | Thale cress | nucleus | 85.82 | 86.45 |
| Bra021389.1-P | Field mustard | nucleus | 82.18 | 83.09 |
| KRH68299 | Soybean | nucleus | 41.09 | 47.68 |
| KRG96561 | Soybean | nucleus | 41.09 | 43.46 |
| Bra039108.1-P | Field mustard | nucleus | 32.0 | 42.93 |
| KRH69178 | Soybean | nucleus | 40.36 | 42.69 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 42.18 | 42.65 |
| Bra001005.1-P | Field mustard | nucleus | 31.64 | 41.83 |
| Bra020624.1-P | Field mustard | nucleus | 48.36 | 41.82 |
| Bra010022.1-P | Field mustard | nucleus | 48.73 | 41.49 |
| Bra010021.1-P | Field mustard | nucleus | 48.73 | 41.49 |
| Bra001202.1-P | Field mustard | nucleus | 45.82 | 41.45 |
| KRH31760 | Soybean | nucleus | 41.82 | 40.78 |
| Bra039067.1-P | Field mustard | nucleus | 33.82 | 40.09 |
| Bra025300.1-P | Field mustard | nucleus | 33.82 | 40.09 |
| Bra029582.1-P | Field mustard | nucleus | 46.18 | 39.44 |
| Bra040274.1-P | Field mustard | nucleus | 44.73 | 38.44 |
| Bra004041.1-P | Field mustard | nucleus | 38.55 | 37.59 |
| Bra012482.1-P | Field mustard | nucleus | 37.45 | 36.27 |
| Bra004297.1-P | Field mustard | nucleus | 37.09 | 35.92 |
| Bra033948.1-P | Field mustard | nucleus | 36.73 | 35.44 |
| Bra024760.1-P | Field mustard | nucleus | 33.82 | 34.96 |
| Bra002533.1-P | Field mustard | nucleus | 29.82 | 34.6 |
| Bra020289.1-P | Field mustard | nucleus | 29.45 | 34.32 |
| Bra006694.1-P | Field mustard | nucleus | 29.82 | 33.88 |
| Bra018223.1-P | Field mustard | nucleus | 30.91 | 33.73 |
| Bra015029.1-P | Field mustard | nucleus | 30.18 | 30.63 |
| Bra006977.1-P | Field mustard | nucleus | 27.27 | 30.61 |
| Bra028550.1-P | Field mustard | nucleus | 26.55 | 30.42 |
| Bra001941.1-P | Field mustard | nucleus | 30.18 | 30.29 |
| Bra028369.1-P | Field mustard | nucleus | 29.82 | 29.93 |
| Bra020744.1-P | Field mustard | nucleus | 26.91 | 28.79 |
| Bra036202.1-P | Field mustard | nucleus | 26.91 | 27.72 |
| Bra025410.1-P | Field mustard | nucleus | 26.55 | 27.24 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 3.27 | 13.04 |
Protein Annotations
| EnsemblPlants:Bra004473.1 | EnsemblPlants:Bra004473.1-P | EnsemblPlantsGene:Bra004473 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF953 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00025480C7 | UniProt:M4CJT9 | MapMan:15.5.2.1 | : | : |
Description
AT2G47190 (E=3e-135) ATMYB2, MYB2 | MYB2 (MYB DOMAIN PROTEIN 2); DNA binding / calmodulin binding / transcription activator/ transcription factor
Coordinates
chrA05:-:311599..312617
Molecular Weight (calculated)
31646.6 Da
IEP (calculated)
4.811
GRAVY (calculated)
-0.799
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYEQNSNS PAHEEDSDVR KGPWTEDEDA ILVNFVSIHG DARWNHIARS SGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQAKHLRCDV NSNLFKETMK NVWMPRLVER INAQTPSPTY EQVESMVTDP SQPIEEPNLV EPDFVQFNQN YHCQQQQFVP
201: ASDVSATSSN SPAETLSDVQ GGVVNGTVYD PAGQTGLGGF NDWGCVGGDN MWTNEDSFWL FQDQLCNETT SYLYN
101: QYLPGRTDNE IKNYWRTRVQ KQAKHLRCDV NSNLFKETMK NVWMPRLVER INAQTPSPTY EQVESMVTDP SQPIEEPNLV EPDFVQFNQN YHCQQQQFVP
201: ASDVSATSSN SPAETLSDVQ GGVVNGTVYD PAGQTGLGGF NDWGCVGGDN MWTNEDSFWL FQDQLCNETT SYLYN
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
Arabidopsis Description
ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.