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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001917.1-P
Bra004162.1-P
Bra004473.1-P
Bra004539.1-P
Bra007957.1-P
Bra008740.1-P
Bra009770.1-P
Bra016164.1-P
Bra021389.1-P
Bra023486.1-P
Bra025311.1-P
Bra025589.1-P
Bra027423.1-P
Bra027653.1-P
Bra027796.1-P
Bra029411.1-P
Bra032635.1-P
Bra039065.1-P
Bra039395.1-P
Bra039763.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63650.1 Bra032635.1-P AT1G01380.1 15361138
AT1G63650.1 Bra001917.1-P AT1G56650.1 12917293
AT1G63650.1 Bra004162.1-P AT1G56650.1 12917293
AT1G63650.1 Bra039763.1-P AT1G56650.1 12917293
AT1G63650.1 Bra001917.1-P AT1G56650.1 15361138
AT1G63650.1 Bra004162.1-P AT1G56650.1 15361138
AT1G63650.1 Bra039763.1-P AT1G56650.1 15361138
AT1G63650.1 Bra027653.1-P AT1G63650.1 12917293
AT1G63650.1 Bra027796.1-P AT1G63650.1 12917293
AT1G63650.1 Bra001917.1-P AT1G66370.1 15361138
AT1G63650.1 Bra004162.1-P AT1G66370.1 15361138
AT1G63650.1 Bra039763.1-P AT1G66370.1 15361138
AT1G63650.1 Bra001917.1-P AT1G66380.1 15361138
AT1G63650.1 Bra004162.1-P AT1G66380.1 15361138
AT1G63650.1 Bra039763.1-P AT1G66380.1 15361138
AT1G63650.1 Bra001917.1-P AT1G66390.1 12917293
AT1G63650.1 Bra004162.1-P AT1G66390.1 12917293
AT1G63650.1 Bra039763.1-P AT1G66390.1 12917293
AT1G63650.1 Bra001917.1-P AT1G66390.1 15361138
AT1G63650.1 Bra004162.1-P AT1G66390.1 15361138
AT1G63650.1 Bra039763.1-P AT1G66390.1 15361138
AT1G63650.1 Bra007957.1-P AT1G71030.1 15361138
AT1G63650.1 Bra016164.1-P AT1G71030.1 15361138
AT1G63650.1 Bra004539.1-P AT2G46410.1 12917293
AT1G63650.1 Bra004539.1-P AT2G46410.1 14627722
AT1G63650.1 Bra004539.1-P AT2G46410.1 15361138
AT1G63650.1 Bra004473.1-P AT2G47190.1 12056412
AT1G63650.1 Bra021389.1-P AT2G47190.1 12056412
AT1G63650.1 Bra027423.1-P AT3G13540.1 15361138
AT1G63650.1 Bra039395.1-P AT3G13540.1 15361138
AT1G63650.1 Bra025311.1-P AT3G27920.1 12917293
AT1G63650.1 Bra039065.1-P AT3G27920.1 12917293
AT1G63650.1 Bra025311.1-P AT3G27920.1 15361138
AT1G63650.1 Bra039065.1-P AT3G27920.1 15361138
AT1G63650.1 Bra008740.1-P AT5G14750.1 14627722
AT1G63650.1 Bra023486.1-P AT5G14750.1 14627722
AT1G63650.1 Bra008740.1-P AT5G14750.1 15361138
AT1G63650.1 Bra023486.1-P AT5G14750.1 15361138
AT1G63650.1 Bra008740.1-P AT5G14750.1 17644729
AT1G63650.1 Bra023486.1-P AT5G14750.1 17644729
AT1G63650.1 Bra009770.1-P AT5G24520.1 12917293
AT1G63650.1 Bra029411.1-P AT5G24520.1 12917293
AT1G63650.1 Bra025589.1-P AT5G40330.1 15361138
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34367 Canola nucleus 98.99 98.99
CDY25513 Canola nucleus 93.96 97.05
Bra027796.1-P Field mustard nucleus 88.42 86.96
AT1G63650.1 Thale cress nucleus 85.23 85.23
Bra025508.1-P Field mustard nucleus 71.98 68.2
VIT_02s0025g03450.t01 Wine grape nucleus 50.0 47.45
GSMUA_Achr11P... Banana nucleus 36.91 46.71
Os04t0557500-00 Rice mitochondrion, plasma membrane 13.93 46.11
Solyc08g081140.2.1 Tomato nucleus 44.97 42.81
GSMUA_Achr8P11430_001 Banana nucleus 38.76 42.31
GSMUA_Achr11P... Banana nucleus 37.42 40.4
GSMUA_Achr11P... Banana nucleus 39.6 39.8
PGSC0003DMT400032140 Potato nucleus 22.32 36.94
GSMUA_Achr5P20600_001 Banana nucleus 35.4 35.88
TraesCSU01G116000.1 Wheat nucleus 26.85 35.09
HORVU2Hr1G096810.5 Barley nucleus 32.38 34.4
Os01t0577300-00 Rice cytosol 6.88 33.61
TraesCS2A01G409600.2 Wheat nucleus, plastid 31.38 33.51
TraesCS2D01G406900.1 Wheat nucleus 31.54 33.16
TraesCS2A01G409400.1 Wheat nucleus 31.54 33.1
Os04t0557200-01 Rice cytosol, nucleus, peroxisome 30.87 32.92
TraesCS2B01G428000.1 Wheat nucleus 31.38 32.64
TraesCSU01G029400.1 Wheat nucleus 31.04 32.34
TraesCS5A01G489500.1 Wheat nucleus 30.87 32.28
TraesCS4B01G397400.1 Wheat nucleus 30.2 31.91
Os04t0557800-00 Rice mitochondrion 30.7 31.88
OQU82120 Sorghum nucleus 31.21 31.63
Zm00001d000236_P001 Maize nucleus, plastid 29.36 31.42
TraesCS4B01G397800.1 Wheat nucleus 26.85 31.37
OQU82117 Sorghum nucleus 31.04 31.36
TraesCS5A01G558500.1 Wheat nucleus 30.7 31.28
OQU81560 Sorghum nucleus 30.87 31.24
TraesCS2D01G406800.1 Wheat plastid 24.16 30.97
TraesCS2D01G575600.3 Wheat nucleus, plastid 30.03 30.39
Zm00001d026147_P002 Maize nucleus 31.38 30.36
TraesCS4D01G224600.1 Wheat nucleus 28.02 29.98
Bra037887.1-P Field mustard nucleus 24.5 29.38
Bra000970.1-P Field mustard nucleus 29.87 27.22
TraesCS4B01G397300.1 Wheat nucleus 17.95 26.29
Bra024993.1-P Field mustard nucleus 15.77 24.93
Bra037343.1-P Field mustard cytosol 29.19 24.47
TraesCSU01G228400.1 Wheat nucleus 14.77 23.98
TraesCSU01G237100.1 Wheat nucleus 14.77 23.98
Os01t0576100-00 Rice nucleus 12.58 23.89
OQU82119 Sorghum nucleus 21.31 23.26
Bra039279.1-P Field mustard nucleus 17.62 22.88
Bra004532.1-P Field mustard nucleus 18.29 22.43
Bra017527.1-P Field mustard nucleus 8.05 21.24
Os11t0258700-00 Rice mitochondrion 16.95 20.91
Bra038458.1-P Field mustard nucleus 15.77 20.84
Bra012720.1-P Field mustard nucleus 15.94 20.83
Bra017520.1-P Field mustard nucleus 17.28 20.68
Bra013264.1-P Field mustard nucleus 10.07 20.2
Bra017523.1-P Field mustard nucleus 17.11 20.12
Bra024992.1-P Field mustard nucleus 9.06 19.93
Bra024998.1-P Field mustard nucleus 18.46 18.97
Bra033273.1-P Field mustard nucleus 18.29 18.66
Bra010178.1-P Field mustard nucleus 17.95 17.83
Bra013128.1-P Field mustard nucleus 7.89 17.6
Bra013263.1-P Field mustard nucleus 7.89 17.34
Bra039924.1-P Field mustard nucleus 8.89 16.93
Bra030208.1-P Field mustard nucleus 8.39 16.45
Bra030210.1-P Field mustard nucleus 8.56 15.84
Bra010617.1-P Field mustard nucleus 8.72 15.57
Bra011790.1-P Field mustard nucleus 8.72 15.48
Bra039926.1-P Field mustard nucleus 7.21 14.83
Bra039927.1-P Field mustard nucleus 7.72 14.56
Bra030207.1-P Field mustard nucleus 7.89 14.42
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10EnsemblPlantsGene:Bra027653EnsemblPlants:Bra027653.1EnsemblPlants:Bra027653.1-Pncoils:Coil
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598
InterPro:IPR036638UniProt:M4EFU0InterPro:MYC/MYB_NPFAM:PF00010PFAM:PF14215PFscan:PS50888
PANTHER:PTHR11514PANTHER:PTHR11514:SF28SMART:SM00353SUPFAM:SSF47459UniParc:UPI0002542406InterPro:bHLH_dom
SEG:seg:::::
Description
AT1G63650 (E=2e-276) EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor
Coordinates
chrA09:-:7105920..7109018
Molecular Weight (calculated)
66288.0 Da
IEP (calculated)
5.423
GRAVY (calculated)
-0.446
Length
596 amino acids
Sequence
(BLAST)
001: MAAVENRTVP ENLKKHLAVS VRNIQWSYGI FWSVSASQPG LLEWGDGYYN GDIKTRKTVQ ASQVKADQLG LERSEQLREL YESLSLAESS TSCGSQVTRR
101: ASAASLSPED LTDTEWFYLV CMSFVFNIGE GIPGGALANG QPIWLCNAHT ADSKVFTRSL LAKSASLLTV VCFPFFGGVL EIGTTEHVAE NLNVIQCVKT
201: LFLEAPHGTL SARSDYQEIF EPLSNDKYIP VFGTEAFPTT STSVYEQEPD DHDSFINGGG ASQVQSWQFV GEELSNCLHQ PLNSSDCVSQ TFVGATGRVS
301: CGPRKSKSQR LGQIQEQSNR VNMDDDVHYQ GVISTIFKTT HQLILGPQFH NFDKRSSFTR WRRSSSSAKS LGEKSQNMLK KIVFEVPRMH QKDTPEDSGY
401: KVGDETANHA LSERKRREKL NDRFMTLRSM IPSISKIDKV SILDDTIDYL QELQRRVQEL ESCRESTDTE MRMAMKRKKP DGEDESASAN CLNNKRKESD
501: IGEDEPADTG YAGLTDNLRI GSFGNEGVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQDALQ RVAWIC
Best Arabidopsis Sequence Match ( AT1G63650.3 )
(BLAST)
001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC
Arabidopsis Description
BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.