Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45357 | Canola | cytosol, golgi, nucleus | 25.27 | 62.63 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 67.09 | 57.88 |
| GSMUA_Achr11P... | Banana | nucleus | 67.52 | 53.63 |
| GSMUA_Achr11P... | Banana | nucleus | 62.42 | 53.26 |
| Os04t0557500-00 | Rice | mitochondrion, plasma membrane | 18.47 | 48.33 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 56.9 | 45.58 |
| CDY39747 | Canola | nucleus | 48.2 | 40.61 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 53.72 | 40.29 |
| Os01t0577300-00 | Rice | cytosol | 10.19 | 39.34 |
| CDY58950 | Canola | nucleus | 47.98 | 39.17 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 46.5 | 39.04 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 46.71 | 38.8 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 45.86 | 38.71 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 54.14 | 38.7 |
| CDY25513 | Canola | nucleus | 47.13 | 38.47 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 46.71 | 38.39 |
| TraesCSU01G116000.1 | Wheat | nucleus | 36.94 | 38.16 |
| AT1G63650.1 | Thale cress | nucleus | 47.98 | 37.92 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 45.01 | 37.32 |
| CDY34367 | Canola | nucleus | 47.13 | 37.25 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 44.59 | 37.23 |
| Bra027653.1-P | Field mustard | nucleus | 46.71 | 36.91 |
| Bra027796.1-P | Field mustard | nucleus | 47.35 | 36.8 |
| Bra025508.1-P | Field mustard | nucleus | 49.04 | 36.73 |
| TraesCSU01G029400.1 | Wheat | nucleus | 44.59 | 36.71 |
| CDY08314 | Canola | nucleus | 47.13 | 36.69 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 43.74 | 36.14 |
| TraesCS2D01G406800.1 | Wheat | plastid | 35.67 | 36.13 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 42.68 | 35.96 |
| AT5G41315.2 | Thale cress | nucleus | 48.62 | 35.5 |
| OQU82117 | Sorghum | nucleus | 44.37 | 35.42 |
| OQU82120 | Sorghum | nucleus | 44.16 | 35.37 |
| OQU81560 | Sorghum | nucleus | 43.95 | 35.14 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 43.95 | 35.14 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 43.52 | 35.04 |
| Solyc08g081140.2.1 | Tomato | nucleus | 46.5 | 34.98 |
| KRH41187 | Soybean | nucleus | 46.71 | 34.92 |
| KRH59908 | Soybean | nucleus | 46.71 | 34.87 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 41.19 | 34.83 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 37.58 | 34.71 |
| Os04t0557800-00 | Rice | mitochondrion | 42.25 | 34.67 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 40.98 | 34.65 |
| CDY51155 | Canola | mitochondrion, nucleus | 38.64 | 33.58 |
| CDY07214 | Canola | mitochondrion, nucleus | 38.43 | 33.39 |
| KRH48144 | Soybean | nucleus | 46.07 | 33.38 |
| Zm00001d026147_P002 | Maize | nucleus | 43.52 | 33.28 |
| KRH65046 | Soybean | nucleus | 45.65 | 33.23 |
| CDY70506 | Canola | nucleus | 36.94 | 32.58 |
| CDX91907 | Canola | nucleus | 37.58 | 32.54 |
| AT4G00480.2 | Thale cress | nucleus | 38.0 | 30.86 |
| CDY72121 | Canola | nucleus | 20.17 | 30.84 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 36.31 | 30.32 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 40.13 | 29.03 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 23.57 | 27.27 |
| TraesCSU01G237100.1 | Wheat | nucleus | 21.23 | 27.25 |
| TraesCSU01G228400.1 | Wheat | nucleus | 21.23 | 27.25 |
| OQU82119 | Sorghum | nucleus | 31.0 | 26.74 |
| Bra000970.1-P | Field mustard | nucleus | 36.73 | 26.45 |
| CDX77694 | Canola | nucleus | 13.8 | 25.69 |
| PGSC0003DMT400032140 | Potato | nucleus | 19.11 | 25.0 |
| Bra037343.1-P | Field mustard | cytosol | 36.09 | 23.91 |
| GSMUA_Achr10P... | Banana | nucleus | 22.08 | 22.66 |
| Os01t0576100-00 | Rice | nucleus | 15.07 | 22.61 |
| Os11t0258700-00 | Rice | mitochondrion | 22.08 | 21.53 |
| GSMUA_Achr10P... | Banana | nucleus | 17.62 | 20.8 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 8.7 | 20.4 |
| GSMUA_Achr9P20820_001 | Banana | nucleus | 15.71 | 20.11 |
| GSMUA_Achr3P00370_001 | Banana | plastid | 18.68 | 20.0 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 13.59 | 19.75 |
| GSMUA_Achr11P... | Banana | nucleus | 18.68 | 19.64 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 20.17 | 19.63 |
| GSMUA_Achr7P04720_001 | Banana | nucleus | 19.53 | 19.62 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 11.04 | 19.55 |
| GSMUA_Achr1P18910_001 | Banana | nucleus | 16.14 | 19.29 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 9.55 | 19.23 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 18.9 | 19.22 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 19.32 | 19.16 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 18.26 | 19.07 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 11.89 | 18.98 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 19.75 | 18.94 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 13.38 | 18.86 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 12.74 | 18.35 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 19.32 | 18.31 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.96 | 18.18 |
| GSMUA_Achr4P16980_001 | Banana | nucleus | 19.11 | 17.75 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 21.66 | 17.74 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 11.68 | 17.57 |
| GSMUA_Achr2P18140_001 | Banana | nucleus | 17.2 | 17.46 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 12.1 | 17.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.25 | 16.46 |
| GSMUA_Achr11P... | Banana | nucleus | 16.77 | 16.42 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 10.83 | 15.36 |
| GSMUA_Achr8P14720_001 | Banana | nucleus | 18.05 | 14.53 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 10.4 | 14.37 |
| GSMUA_Achr1P08130_001 | Banana | mitochondrion | 16.56 | 13.98 |
| GSMUA_Achr5P18100_001 | Banana | nucleus | 14.44 | 13.91 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr11G17560_001 | EnsemblPlants:GSMUA_Achr11P17560_001 | EnsemblPlants:GSMUA_Achr11T17560_001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M0RT36 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF38 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029493E1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
Putative Transcription factor MYC1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G17560_001]
Coordinates
chr11:+:19103837..19106858
Molecular Weight (calculated)
52998.3 Da
IEP (calculated)
4.728
GRAVY (calculated)
-0.462
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDPEMHDE LPEKPLRRQL AATVRTIQWS YAIFWSTSTR QPGVLSWSDG YYNGDIKTRK TTQSVELKAD QMGLQRSEQL RELYESLSAG DSNQQMRRPC
101: ASLSPEDLTH TEWYYLVCMS FTFTPGQGLP GKAFANNQHE WLSNAQFADS RIFSRSLLAK SASIQTVACI PFMGGVLELG TTESILEDAA VVTQITSFFW
201: ELPFPVRSEQ SMSSPQMADD DDDDDDDDVD DAEEVHTDHL CDYDELISLN SNEYASMSVV PWRPGESGSN HVLSERRSGE KLNEKFLVLQ SLIPSVTKVD
301: KASILGDTIE YLKDMERRVQ ELESCRESSL ELDAKNRRKH PDVAERTSDN YGSKEMMANG RKSCSNKRKT CDAGETEAEH HWVLSRDGPI DVIVTMKEAE
401: VVVEIHCPWR ECLLLEIVES ISHFHLDPLS VQSSTVDGVL ALTVKSKFRS AIVASPGMIK RSLHRVIGKC L
101: ASLSPEDLTH TEWYYLVCMS FTFTPGQGLP GKAFANNQHE WLSNAQFADS RIFSRSLLAK SASIQTVACI PFMGGVLELG TTESILEDAA VVTQITSFFW
201: ELPFPVRSEQ SMSSPQMADD DDDDDDDDVD DAEEVHTDHL CDYDELISLN SNEYASMSVV PWRPGESGSN HVLSERRSGE KLNEKFLVLQ SLIPSVTKVD
301: KASILGDTIE YLKDMERRVQ ELESCRESSL ELDAKNRRKH PDVAERTSDN YGSKEMMANG RKSCSNKRKT CDAGETEAEH HWVLSRDGPI DVIVTMKEAE
401: VVVEIHCPWR ECLLLEIVES ISHFHLDPLS VQSSTVDGVL ALTVKSKFRS AIVASPGMIK RSLHRVIGKC L
001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
Arabidopsis Description
ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.