Factsheet for GSMUA_Achr1P14370_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21870_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P22110_001
GSMUA_Achr6P31050_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P16780_001
GSMUA_Achr9P14370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_AchrUn_...	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05350_001	Banana	nucleus	57.74	73.61
GSMUA_Achr8P26280_001	Banana	cytosol	53.39	66.31
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	51.48	62.32
GSMUA_Achr1P28110_001	Banana	nucleus	49.74	57.55
GSMUA_Achr10P...	Banana	nucleus	45.57	57.08
GSMUA_Achr6P35730_001	Banana	nucleus	47.13	55.19
GSMUA_Achr7P14640_001	Banana	nucleus	41.39	49.17
KRH68922	Soybean	nucleus	43.3	45.27
VIT_15s0046g00320.t01	Wine grape	nucleus	46.78	44.54
CDY27319	Canola	nucleus	33.91	44.02
PGSC0003DMT400000652	Potato	nucleus	45.04	43.31
Bra004532.1-P	Field mustard	nucleus	35.83	42.39
Solyc01g096050.2.1	Tomato	nucleus	44.52	42.31
Bra039279.1-P	Field mustard	nucleus	33.57	42.05
CDY56874	Canola	nucleus	35.83	41.96
CDY66312	Canola	nucleus	33.39	41.92
CDX80023	Canola	nucleus	35.48	41.89
PGSC0003DMT400018046	Potato	extracellular, nucleus	41.74	41.52
Solyc05g050560.1.1	Tomato	nucleus	41.57	41.28
TraesCS4B01G276900.1	Wheat	nucleus	42.78	41.14
TraesCS4D01G275500.1	Wheat	nucleus	42.61	40.97
TraesCS4A01G028900.1	Wheat	nucleus	42.43	40.87
KRH47899	Soybean	nucleus	44.35	40.73
KRG97199	Soybean	nucleus	43.83	40.71
KRH06456	Soybean	nucleus	43.65	40.61
EER99993	Sorghum	nucleus	43.65	40.35
CDX90021	Canola	nucleus	37.57	40.0
Os01t0235700-01	Rice	nucleus	42.78	39.87
Zm00001d039271_P001	Maize	nucleus	42.61	39.77
Zm00001d009013_P001	Maize	nucleus	42.26	39.77
TraesCS3A01G158600.1	Wheat	nucleus	42.43	39.61
AT2G46510.1	Thale cress	nucleus	38.96	39.58
TraesCS3B01G185400.1	Wheat	nucleus	42.78	39.36
AT1G01260.1	Thale cress	nucleus	40.35	39.32
TraesCS3D01G166300.2	Wheat	nucleus	42.61	39.2
Bra033273.1-P	Field mustard	nucleus	39.3	38.7
EES19274	Sorghum	nucleus	39.3	38.5
GSMUA_Achr11P...	Banana	nucleus	25.39	32.59
HORVU3Hr1G057280.2	Barley	nucleus	42.96	32.2
GSMUA_Achr1P18910_001	Banana	nucleus	21.74	31.73
GSMUA_Achr7P04720_001	Banana	nucleus	25.22	30.92
GSMUA_Achr10P...	Banana	nucleus	21.04	30.33
GSMUA_Achr2P18140_001	Banana	nucleus	23.83	29.53
GSMUA_Achr3P00370_001	Banana	plastid	22.43	29.32
GSMUA_Achr4P16980_001	Banana	nucleus	25.22	28.6
GSMUA_Achr9P20820_001	Banana	nucleus	17.91	27.99
Zm00001d007536_P001	Maize	plastid	28.87	27.35
GSMUA_Achr8P14720_001	Banana	nucleus	27.3	26.84
GSMUA_Achr5P18100_001	Banana	nucleus	22.09	25.97
GSMUA_Achr2P08590_001	Banana	nucleus	11.48	24.81
GSMUA_Achr11P...	Banana	nucleus	20.7	24.74
GSMUA_Achr8P05170_001	Banana	nucleus	8.52	24.38
GSMUA_AchrUn_...	Banana	cytosol	21.91	24.37
GSMUA_Achr1P08130_001	Banana	mitochondrion	21.57	22.22
GSMUA_Achr4P03160_001	Banana	nucleus	12.35	21.71
GSMUA_Achr11P...	Banana	nucleus	17.74	21.66
GSMUA_Achr3P26180_001	Banana	nucleus	10.78	21.02
GSMUA_Achr8P11430_001	Banana	nucleus	19.83	20.88
GSMUA_Achr11P...	Banana	nucleus	19.3	20.11
GSMUA_AchrUn_...	Banana	nucleus	11.13	19.88
GSMUA_Achr7P27600_001	Banana	nucleus	11.48	19.76
GSMUA_Achr8P26460_001	Banana	nucleus	11.3	19.58
GSMUA_Achr7P00800_001	Banana	cytosol	7.83	19.23
GSMUA_Achr11P...	Banana	nucleus	19.48	18.89
GSMUA_Achr3P30620_001	Banana	nucleus	10.61	18.83
GSMUA_Achr3P17620_001	Banana	nucleus	18.26	18.62
GSMUA_Achr4P23070_001	Banana	nucleus	9.74	17.89
GSMUA_Achr5P20600_001	Banana	nucleus	17.22	16.84
GSMUA_Achr6P21490_001	Banana	nucleus	18.43	16.28
GSMUA_Achr4P14580_001	Banana	nucleus	8.7	15.06
GSMUA_Achr4P03170_001	Banana	nucleus	7.65	12.9

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr1G14370_001	EnsemblPlants:GSMUA_Achr1P14370_001	EnsemblPlants:GSMUA_Achr1T14370_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0RZU5	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029626A6	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor bHLH13 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14370_001]

Coordinates

chr1:+:10930979..10933758

Molecular Weight (calculated)

62820.3 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.418

Length

575 amino acids

Sequence
(BLAST)

001: MNTTSLSPYK TVQGNRFHVC VDGCVLRDGC VDANIYLARF LNPWEWARVE LQGIGTGMGS FWSDEDRQVA VAVLGHQAFD YLNALHTSLS DGHLTAVGGG
101: DADLQTKLQD LVEGTSSSCS SVSAWAYAIF WQISRSGSGD LVLGWGDGHC RELSDGEEEG GIQRLPLDGA NQKMRKRVLE KLHTLAGGSA DENYALRLDR
201: ITDAEMYFLA SMYFSFPKGE DAPGKALASG KHIWISEAGL NSPVCSSYCV RTFLARSAGF RTILFVPFDT GVLELGSMDP VPESFEALHT IRSVFGQGRN
301: KAAAALAAGE KIGENHGAVS ASRFGPEQRP SELITKHGDH HQNIPPTNGA TNQSQPQKPP PPAPQPRRQQ PMPHPLPQSG QIDFSTGEAN SASVGVSVGR
401: LGAPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR SVVPNISKMD KASLLGDAIS YITELQNKLK EMEAEREMWG DPSFMDRKRR AYMHPEIDVE
501: AAQDEVIVRM SCPLDVHPVS KVIQALKDLQ IDVVDSKVAA NSDSVLHTFV VKSPGAEQPT KEKLIAALTQ ELNAT

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.