Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 44.4 | 49.28 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 39.66 | 41.63 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 43.1 | 39.53 |
| Os03t0402800-01 | Rice | plastid | 38.36 | 39.04 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 37.5 | 38.16 |
| TraesCS2A01G169300.1 | Wheat | plastid | 35.34 | 35.5 |
| Zm00001d022139_P001 | Maize | plastid | 35.34 | 35.19 |
| EER92157 | Sorghum | plastid | 34.48 | 35.09 |
| EER97533 | Sorghum | plastid | 34.91 | 34.47 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 32.76 | 33.63 |
| TraesCS2B01G195600.1 | Wheat | plastid | 33.19 | 33.33 |
| GSMUA_Achr10P... | Banana | cytosol | 22.84 | 32.72 |
| TraesCS2D01G176800.1 | Wheat | plastid | 32.33 | 32.47 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 29.74 | 32.39 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 33.19 | 31.95 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 32.33 | 31.38 |
| Os07t0615200-01 | Rice | mitochondrion | 31.9 | 30.33 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 32.33 | 29.88 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 34.05 | 29.81 |
| Zm00001d006860_P001 | Maize | plastid | 34.05 | 29.7 |
| Solyc07g042170.2.1 | Tomato | cytosol | 27.59 | 29.63 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 31.03 | 29.15 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 30.17 | 28.93 |
| PGSC0003DMT400075155 | Potato | nucleus | 26.72 | 28.84 |
| Bra003778.1-P | Field mustard | cytosol | 27.59 | 28.83 |
| CDX68156 | Canola | cytosol | 22.41 | 28.73 |
| Solyc12g009220.1.1 | Tomato | nucleus | 31.03 | 28.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.74 | 27.94 |
| CDX85865 | Canola | cytosol | 26.72 | 27.68 |
| PGSC0003DMT400007592 | Potato | nucleus | 30.17 | 27.56 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 31.47 | 27.24 |
| CDY46022 | Canola | nucleus | 28.02 | 27.08 |
| Bra008172.1-P | Field mustard | nucleus | 27.59 | 26.67 |
| CDY37269 | Canola | nucleus | 27.59 | 26.67 |
| Bra015880.1-P | Field mustard | cytosol | 28.02 | 26.53 |
| CDX73127 | Canola | cytosol | 28.02 | 26.53 |
| CDY45408 | Canola | cytosol | 28.02 | 26.53 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 39.22 | 25.78 |
| AT1G74950.1 | Thale cress | cytosol | 27.59 | 25.7 |
| CDY26697 | Canola | plastid | 27.59 | 25.3 |
| CDY41023 | Canola | plastid | 27.59 | 25.2 |
| Bra025713.1-P | Field mustard | plastid | 27.59 | 25.2 |
| Bra016520.1-P | Field mustard | plastid | 28.02 | 25.1 |
| CDX96675 | Canola | plastid | 28.45 | 25.1 |
| CDX73289 | Canola | cytosol | 20.26 | 25.0 |
| AT1G19180.1 | Thale cress | cytosol | 27.16 | 24.9 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 16.38 | 24.52 |
| CDX83781 | Canola | plastid | 27.59 | 24.24 |
| Bra031065.1-P | Field mustard | plastid | 28.02 | 23.81 |
| GSMUA_Achr10P... | Banana | cytosol | 18.1 | 23.73 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 16.38 | 20.54 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 13.79 | 19.51 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 17.67 | 18.72 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 16.81 | 17.11 |
| CDX81917 | Canola | plastid | 28.02 | 12.8 |
| CDY21679 | Canola | plastid | 28.02 | 11.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P09290_001 | EnsemblPlants:GSMUA_Achr11T09290_001 | EnsemblPlantsGene:GSMUA_Achr11G09290_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF19 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SMART:SM00979 |
| UniParc:UPI000294B80C | UniProt:M0RQQ9 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 10B [Source:GMGC_GENE;Acc:GSMUA_Achr11G09290_001]
Coordinates
chr11:-:7169824..7171794
Molecular Weight (calculated)
24992.7 Da
IEP (calculated)
9.876
GRAVY (calculated)
-0.478
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDPNWKGD RGSSIASTVE RGVMAEAGRK QGRTNFAVTC TLLSQYIKEK GSIADLGLGI AQDAAIGKSE SVRPPTTMSV IPGADLCRGE DGAKELFPQS
101: VDLGPAVLED AREAARGQLT IFYGGKVLVF DKFPAEKAKD LMQLATKGNS ASQNSVHMSR SAQPNLPDLP IARKASLQRF LEKRKDRINA RSPYQVSASP
201: ELGINREDNK SWLGLGPRFS IPSLSPSSEY NR
101: VDLGPAVLED AREAARGQLT IFYGGKVLVF DKFPAEKAKD LMQLATKGNS ASQNSVHMSR SAQPNLPDLP IARKASLQRF LEKRKDRINA RSPYQVSASP
201: ELGINREDNK SWLGLGPRFS IPSLSPSSEY NR
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.